RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 RAB19A4D1S5 217 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 PCP4L1A6NKN8 68 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 TNFRSF6BO95407 300 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 NTF3P20783 257 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 AMTP48728 403 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 PRR3P79522 188 aaKnown RBP5.47□□□□□ -1.53
CAPN3-208ENST00000397204 KRTAP15-1Q3LI76 137 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 SMIM12Q96EX1 92 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 PKIGQ9Y2B9 76 aa5.47□□□□□ -1.53
CAPN3-208ENST00000397204 GVQW2A0A096LPI5 108 aaPredicted RBP5.46□□□□□ -1.54
CAPN3-208ENST00000397204 IGKV2-24A0A0C4DH68 120 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 A0A1B0GV50 99 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 C19orf71A6NCJ1 209 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 H7C423 109 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 IFNA1P01562 189 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 SRSF9Q13242 221 aaKnown RBP eCLIP5.46□□□□□ -1.54
CAPN3-208ENST00000397204 HIGD2BQ4VC39 106 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 LYZL1Q6UWQ5 148 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 C9orf62Q8N4C0 152 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 LYPD6BQ8NI32 183 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 CHCHD10Q8WYQ3 142 aaPredicted RBP5.46□□□□□ -1.54
CAPN3-208ENST00000397204 C11orf52Q96A22 123 aa5.46□□□□□ -1.54
CAPN3-208ENST00000397204 IGKV3OR2-268A0A0C4DH90 116 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 NCR2O95944 276 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 EIF5AP63241 154 aaKnown RBP5.45□□□□□ -1.54
CAPN3-208ENST00000397204 CCL20P78556 96 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 ZNF345Q14585 488 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 CENPWQ5EE01 88 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 AMMECR1LQ6DCA0 310 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 MANBALQ9NQG1 85 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 BIN3Q9NQY0 253 aa5.45□□□□□ -1.54
CAPN3-208ENST00000397204 A0A096LNI7 61 aa5.44□□□□□ -1.54
CAPN3-208ENST00000397204 TRAV1-1A0A0B4J248 108 aa5.44□□□□□ -1.54
CAPN3-208ENST00000397204 GNG4P50150 75 aa5.44□□□□□ -1.54
CAPN3-208ENST00000397204 Q6ZRP5 223 aa5.44□□□□□ -1.54
CAPN3-208ENST00000397204 GATD1Q8NB37 220 aa5.44□□□□□ -1.54
CAPN3-208ENST00000397204 HMSDA8MTL9 139 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 ZNF25P17030 456 aaPredicted RBP5.43□□□□□ -1.54
CAPN3-208ENST00000397204 FOXI1Q12951 378 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 TWIST1Q15672 202 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 RNASEKQ6P5S7 137 aaKnown RBP5.43□□□□□ -1.54
CAPN3-208ENST00000397204 TEX261Q6UWH6 196 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 OR5A1Q8NGJ0 315 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 CNFNQ9BYD5 112 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 VCX2Q9H322 139 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 GNG13Q9P2W3 67 aa5.43□□□□□ -1.54
CAPN3-208ENST00000397204 IGHV1-58A0A0C4DH39 117 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 KANTRA0A1W2PQU2 76 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 TEX46H3BTG2 121 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 PDE6DO43924 150 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 FGF6P10767 208 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 G0S2P27469 103 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 CTRLP40313 264 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 TMEM101Q96IK0 257 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 BTF3L4Q96K17 158 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 MED9Q9NWA0 146 aa5.42□□□□□ -1.54
CAPN3-208ENST00000397204 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-208ENST00000397204 LINC00959A0A1B0GUT2 108 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 IGKV2-29A2NJV5 120 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-208ENST00000397204 F8WDY8 70 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 BCL2L11O43521 198 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 APCSP02743 223 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 XCL1P47992 114 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 MEF2BQ02080 365 aaPredicted RBP5.41□□□□□ -1.54
CAPN3-208ENST00000397204 Q6ZNX1 250 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 SMIM15Q7Z3B0 74 aa5.41□□□□□ -1.54
CAPN3-208ENST00000397204 LPAP08519 4548 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 TRBV20OR9-2A0A075B6H5 130 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 TRAV26-2A0A0B4J265 109 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 FAM231BA6NCW3 169 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 SDHAF1A6NFY7 115 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 SMLR1H3BR10 107 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 I3L3M4 83 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 CCL25O15444 150 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 PMCHP20382 165 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 SYCNQ0VAF6 134 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 SS18Q15532 418 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 RPL39LQ96EH5 51 aaKnown RBP5.4□□□□□ -1.54
CAPN3-208ENST00000397204 CARD19Q96LW7 228 aa5.4□□□□□ -1.54
CAPN3-208ENST00000397204 TRBV6-5A0A0K0K1A5 114 aa5.39□□□□□ -1.55
CAPN3-208ENST00000397204 GAS8-AS1O95177 125 aa5.39□□□□□ -1.55
CAPN3-208ENST00000397204 EIF5AL1Q6IS14 154 aaKnown RBP5.39□□□□□ -1.55
CAPN3-208ENST00000397204 CD164L2Q6UWJ8 174 aa5.39□□□□□ -1.55
CAPN3-208ENST00000397204 ISOC2Q96AB3 205 aa5.39□□□□□ -1.55
CAPN3-208ENST00000397204 LINC00526Q96FQ7 95 aa5.39□□□□□ -1.55
CAPN3-208ENST00000397204 LOC107984640A0A0U1RRK4 108 aa5.38□□□□□ -1.55
CAPN3-208ENST00000397204 ESDP10768 282 aa5.38□□□□□ -1.55
CAPN3-208ENST00000397204 MRPL52Q86TS9 123 aaKnown RBP5.38□□□□□ -1.55
CAPN3-208ENST00000397204 ZNF664Q8N3J9 261 aa5.38□□□□□ -1.55
CAPN3-208ENST00000397204 OCC1Q8TAD7 63 aa5.38□□□□□ -1.55
CAPN3-208ENST00000397204 RPP21Q9H633 154 aaKnown RBP5.38□□□□□ -1.55
CAPN3-208ENST00000397204 CDC42SE2Q9NRR3 84 aa5.38□□□□□ -1.55
CAPN3-208ENST00000397204 A0A1W2PNN7 141 aa5.37□□□□□ -1.55
CAPN3-208ENST00000397204 C1orf196B1AJZ1 125 aa5.37□□□□□ -1.55
CAPN3-208ENST00000397204 CAMPP49913 170 aa5.37□□□□□ -1.55
CAPN3-208ENST00000397204 FOXA3P55318 350 aaPredicted RBP5.37□□□□□ -1.55
CAPN3-208ENST00000397204 GAGE2BQ13066 116 aa5.37□□□□□ -1.55
CAPN3-208ENST00000397204 MRAP2Q96G30 205 aa5.37□□□□□ -1.55
CAPN3-208ENST00000397204 RNASE7Q9H1E1 156 aaKnown RBP5.37□□□□□ -1.55
CAPN3-208ENST00000397204 ST20Q9HBF5 79 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms