RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DHRS4-AS1Q9P1J3 65 aa5.37□□□□□ -1.55
UPF2-203ENST00000397053 A0A0J9YXY3 114 aa5.37□□□□□ -1.55
UPF2-203ENST00000397053 J3KT08 172 aa5.37□□□□□ -1.55
UPF2-203ENST00000397053 IGHV4-30-4P0DP06 118 aa5.37□□□□□ -1.55
UPF2-203ENST00000397053 RPL28P46779 137 aaKnown RBP5.37□□□□□ -1.55
UPF2-203ENST00000397053 C10orf99Q6UWK7 81 aa5.37□□□□□ -1.55
UPF2-203ENST00000397053 ARID2Q68CP9 1835 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 SLPIP03973 132 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 CD164L2Q6UWJ8 174 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 NEXN-AS1Q8NBZ9 246 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 M0R378 163 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 PLA2G2AP14555 144 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 FLNBO75369 2602 aaKnown RBP5.36□□□□□ -1.55
UPF2-203ENST00000397053 RPL37AP8A6NKH3 93 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 PIK3CD-AS1Q5SR53 167 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 Q6ZQY7 126 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 CLUHP3Q96NS8 147 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 WFDC10AQ9H1F0 79 aa5.36□□□□□ -1.55
UPF2-203ENST00000397053 ZNF80P51504 273 aaPredicted RBP5.35□□□□□ -1.55
UPF2-203ENST00000397053 SERP2Q8N6R1 65 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 X6R8D5 127 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 CFAP126Q5VTH2 177 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 PSMG3-AS1Q96PY0 264 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 PLXND1Q9Y4D7 1925 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 SBF2Q86WG5 1849 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 MLST8Q9BVC4 326 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 VWA8A3KMH1 1905 aa5.35□□□□□ -1.55
UPF2-203ENST00000397053 IGLV5-52A0A0A0MRZ9 124 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 KRTAP27-1Q3LI81 207 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 MPLKIPQ8TAP9 179 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 MRGPRG-AS1Q2M3A8 158 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 CIRBP-AS1Q8TBR5 109 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 PTH2Q96A98 100 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 RLFQ13129 1914 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 THSD7BQ9C0I4 1608 aa5.34□□□□□ -1.55
UPF2-203ENST00000397053 IGLV2-8P01709 118 aa5.34□□□□□ -1.56
UPF2-203ENST00000397053 LTBP1Q14766 1721 aa5.34□□□□□ -1.56
UPF2-203ENST00000397053 IGLV4-3A0A075B6K6 122 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 LINC00308Q8TCZ7 52 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 FNDC1Q4ZHG4 1894 aaPredicted RBP5.33□□□□□ -1.56
UPF2-203ENST00000397053 ENHOQ6UWT2 76 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 CEP295Q9C0D2 2601 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 FAM19A3Q7Z5A8 133 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 ZNF702PQ9H963 129 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 WNK3Q9BYP7 1800 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 ZNF22P17026 224 aaPredicted RBP5.33□□□□□ -1.56
UPF2-203ENST00000397053 COA6Q5JTJ3 125 aaKnown RBP5.33□□□□□ -1.56
UPF2-203ENST00000397053 ATP5EP2Q5VTU8 51 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 SDIM1Q6ZPB5 146 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 LYPD6Q86Y78 171 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 SMR3AQ99954 134 aa5.33□□□□□ -1.56
UPF2-203ENST00000397053 LST1O00453 97 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 NUPR1O60356 82 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 PRR4Q16378 134 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 C10orf91Q5T1B1 145 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 Q6ZSR3 168 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 TDRG1Q3Y452 100 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 MRPL55Q7Z7F7 128 aaKnown RBP5.32□□□□□ -1.56
UPF2-203ENST00000397053 ZFAND3Q9H8U3 227 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 HELZP42694 1942 aaKnown RBP5.32□□□□□ -1.56
UPF2-203ENST00000397053 KMT2EQ8IZD2 1858 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 NOTCH4Q99466 2003 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 M0QY20 66 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 PROK1P58294 105 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 EBI3Q14213 229 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 C1orf134Q5TEV5 83 aa5.32□□□□□ -1.56
UPF2-203ENST00000397053 M0QXV9 152 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 FRMD6-AS1P0C7T7 363 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 C20orf173Q96LM9 149 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 U3KQK5 164 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 TRBV6-5A0A0K0K1A5 114 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 FAM240AA0A1B0GVK7 77 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 GDF5OSQ5U4N7 250 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 C10orf25Q5T742 122 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 LINC00959A0A1B0GUT2 108 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 A6NED7 52 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 G3V4G9 280 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 FSTL3O95633 263 aa5.31□□□□□ -1.56
UPF2-203ENST00000397053 XIRP1Q702N8 1843 aaKnown RBP5.3□□□□□ -1.56
UPF2-203ENST00000397053 LOC100131303A0A0U1RQF7 123 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 IGLV2-11P01706 119 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 IGLC6P0CF74 106 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 C22orf34Q6ZV56 151 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 LINC00337Q8N6G1 96 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 V9GYY9 64 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 ZNF73O43830 326 aaPredicted RBP5.3□□□□□ -1.56
UPF2-203ENST00000397053 BRI3O95415 125 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 USP24Q9UPU5 2620 aa5.3□□□□□ -1.56
UPF2-203ENST00000397053 TNRC6AQ8NDV7 1962 aaKnown RBP5.29□□□□□ -1.56
UPF2-203ENST00000397053 ANKRD11Q6UB99 2663 aaPredicted RBP5.29□□□□□ -1.56
UPF2-203ENST00000397053 TMEM223A0PJW6 202 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 LINC00574Q9H8X3 128 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 GREB1LQ9C091 1923 aaPredicted RBP5.29□□□□□ -1.56
UPF2-203ENST00000397053 CYSRT1A8MQ03 144 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 NDUFA7O95182 113 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 LINC01556Q5JQF7 62 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 C11orf71Q6IPW1 123 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 C18orf65Q6ZTR6 163 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 C6orf223Q8N319 242 aa5.29□□□□□ -1.56
UPF2-203ENST00000397053 TNRC6BQ9UPQ9 1833 aaKnown RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms