RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 H3BMM0 161 aa7.09□□□□□ -1.27
COL6A3-204ENST00000392003 I3L3M4 83 aa7.09□□□□□ -1.27
COL6A3-204ENST00000392003 TMEM61Q8N0U2 210 aa7.09□□□□□ -1.27
COL6A3-204ENST00000392003 MXRA5Q9NR99 2828 aa7.09□□□□□ -1.27
COL6A3-204ENST00000392003 CR1P17927 2039 aa7.09□□□□□ -1.27
COL6A3-204ENST00000392003 VPS13CQ709C8 3753 aa7.09□□□□□ -1.27
COL6A3-204ENST00000392003 C11orf86A6NJI1 115 aa7.08□□□□□ -1.28
COL6A3-204ENST00000392003 ZNRF2Q8NHG8 242 aa7.08□□□□□ -1.28
COL6A3-204ENST00000392003 CSMD2Q7Z408 3487 aa7.08□□□□□ -1.28
COL6A3-204ENST00000392003 NSUN5P1Q3KNT7 163 aa7.08□□□□□ -1.28
COL6A3-204ENST00000392003 Q6Q795 121 aa7.08□□□□□ -1.28
COL6A3-204ENST00000392003 A8MWV9 139 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 C3orf22Q8N5N4 141 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 IGHV3-73A0A0B4J1V6 119 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 M0R2P5 195 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 TSHBP01222 138 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 DPH3Q96FX2 82 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 TENM4Q6N022 2769 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 PYGO1Q9Y3Y4 419 aa7.07□□□□□ -1.28
COL6A3-204ENST00000392003 TRBV7-3A0A075B6L6 115 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 hADV29S1A0JD25 119 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 SCGB1C2P0DMR2 95 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 LGALS3P17931 250 aaKnown RBP7.06□□□□□ -1.28
COL6A3-204ENST00000392003 C20orf203Q8NBC4 194 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 MAP6D1Q9H9H5 199 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 IGLV4-69A0A075B6H9 119 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 INSP01308 110 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 DEFB114Q30KQ6 69 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 RETNQ9HD89 108 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 TCL1BO95988 128 aa7.06□□□□□ -1.28
COL6A3-204ENST00000392003 GCN1Q92616 2671 aaKnown RBP7.05□□□□□ -1.28
COL6A3-204ENST00000392003 FN1P02751 2386 aaKnown RBP7.05□□□□□ -1.28
COL6A3-204ENST00000392003 A8MTW9 85 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 TIRAPP58753 221 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 LYRM7Q5U5X0 104 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 GAGE2AQ6NT46 116 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 SPANXA1Q9NS26 97 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 FLNBO75369 2602 aaKnown RBP7.05□□□□□ -1.28
COL6A3-204ENST00000392003 CCL24O00175 119 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 RBMY1A1P0DJD3 496 aaKnown RBP7.05□□□□□ -1.28
COL6A3-204ENST00000392003 RBMY1CP0DJD4 496 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 CD28P10747 220 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 RBMY1FQ15415 496 aaKnown RBP7.05□□□□□ -1.28
COL6A3-204ENST00000392003 SMR3AQ99954 134 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 ESM1Q9NQ30 184 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 JMJD1CQ15652 2540 aa7.05□□□□□ -1.28
COL6A3-204ENST00000392003 RPS28P62857 69 aaKnown RBP7.04□□□□□ -1.28
COL6A3-204ENST00000392003 STHQ8IWL8 128 aa7.04□□□□□ -1.28
COL6A3-204ENST00000392003 PIK3CD-AS1Q5SR53 167 aa7.04□□□□□ -1.28
COL6A3-204ENST00000392003 RBMY1BA6NDE4 496 aaKnown RBP7.04□□□□□ -1.28
COL6A3-204ENST00000392003 RBMY1EA6NEQ0 496 aaKnown RBP7.04□□□□□ -1.28
COL6A3-204ENST00000392003 RBMY1DP0C7P1 496 aaKnown RBP7.04□□□□□ -1.28
COL6A3-204ENST00000392003 TEX49A0A1B0GTD5 131 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 J3QQQ9 107 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 C1orf195Q5TG92 126 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 NTN5Q8WTR8 489 aaPredicted RBP7.03□□□□□ -1.28
COL6A3-204ENST00000392003 OPRPNQ99935 248 aaPredicted RBP7.03□□□□□ -1.28
COL6A3-204ENST00000392003 P0DMU3 169 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 FAM231AP0DMU4 169 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 FAM231CP0DMU5 169 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 PLEKHB2Q96CS7 222 aa7.03□□□□□ -1.28
COL6A3-204ENST00000392003 IGHV3OR16-12A0A075B7B8 117 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 LINC01006Q8NI28 216 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 XCL2Q9UBD3 114 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 NF1P21359 2839 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 IGLV4-3A0A075B6K6 122 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 PFN2P35080 140 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 PROK1P58294 105 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 LINC00482Q8N8I6 264 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 LINC00526Q96FQ7 95 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 LEPROTO15243 131 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 RNASE1P07998 156 aaKnown RBP7.02□□□□□ -1.29
COL6A3-204ENST00000392003 LINC01561Q8N1V8 128 aa7.02□□□□□ -1.29
COL6A3-204ENST00000392003 A0A0J9YXV3 536 aa7.01□□□□□ -1.29
COL6A3-204ENST00000392003 A0A0J9YY99 117 aa7.01□□□□□ -1.29
COL6A3-204ENST00000392003 PRM2P04554 102 aa7.01□□□□□ -1.29
COL6A3-204ENST00000392003 LINC00467Q9BRT7 94 aa7.01□□□□□ -1.29
COL6A3-204ENST00000392003 TRAV8-4A0A0B4J246 113 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 UQCRQO14949 82 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 TMEM223A0PJW6 202 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 LY6G6DO95868 133 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 CMC4P56277 68 aaPredicted RBP7□□□□□ -1.29
COL6A3-204ENST00000392003 IGHV3-64A0A075B6Q5 118 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 PF4P02776 101 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 ZNF22P17026 224 aaPredicted RBP7□□□□□ -1.29
COL6A3-204ENST00000392003 KRTAP1-1Q07627 177 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 DGAT2L7PQ6IED9 249 aa7□□□□□ -1.29
COL6A3-204ENST00000392003 IGHV3-53P01767 116 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 SLC25A29Q8N8R3 303 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 SLC25A20O43772 301 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 TSPEAR-AS2P59090 65 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 HILS1P60008 231 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 ODF3L2Q3SX64 289 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 TRGV1A0A0A0MS02 117 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 SBSPONQ8IVN8 264 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 C11orf72Q8NBR9 251 aa6.99□□□□□ -1.29
COL6A3-204ENST00000392003 BEAN1Q3B7T3 259 aa6.98□□□□□ -1.29
COL6A3-204ENST00000392003 TIMM21Q9BVV7 248 aa6.98□□□□□ -1.29
COL6A3-204ENST00000392003 UBE2D1P51668 147 aa6.98□□□□□ -1.29
COL6A3-204ENST00000392003 IGHV3-38A0A0C4DH36 116 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms