RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 K7EQG2 157 aa12.93□□□□□ -0.34
SQSTM1-202ENST00000389805 LST1O00453 97 aa12.92□□□□□ -0.34
SQSTM1-202ENST00000389805 SNRPD3P62318 126 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-202ENST00000389805 RHOHQ15669 191 aa12.92□□□□□ -0.34
SQSTM1-202ENST00000389805 HTN1P15515 57 aa12.91□□□□□ -0.34
SQSTM1-202ENST00000389805 SLURP1P55000 103 aa12.91□□□□□ -0.34
SQSTM1-202ENST00000389805 LINC01600Q96MT4 127 aa12.91□□□□□ -0.34
SQSTM1-202ENST00000389805 FSHBP01225 129 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 TMEM101Q96IK0 257 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 CHD6Q8TD26 2715 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 NACAE9PAV3 2078 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 MTORP42345 2549 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 IGHV3-16A0A0C4DH30 117 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 LINC00694P0DN24 101 aa12.9□□□□□ -0.34
SQSTM1-202ENST00000389805 PRM2P04554 102 aa12.9□□□□□ -0.35
SQSTM1-202ENST00000389805 PROK1P58294 105 aa12.9□□□□□ -0.35
SQSTM1-202ENST00000389805 ITPR3Q14573 2671 aa12.9□□□□□ -0.35
SQSTM1-202ENST00000389805 MIAQ16674 131 aa12.9□□□□□ -0.35
SQSTM1-202ENST00000389805 Q96MF0 132 aa12.9□□□□□ -0.35
SQSTM1-202ENST00000389805 TMEM61Q8N0U2 210 aa12.89□□□□□ -0.35
SQSTM1-202ENST00000389805 KLK5Q9Y337 293 aaPredicted RBP12.89□□□□□ -0.35
SQSTM1-202ENST00000389805 ACANP16112 2415 aa12.89□□□□□ -0.35
SQSTM1-202ENST00000389805 IGHV1-58A0A0C4DH39 117 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 TRBV7-7A0A0K0K1E9 115 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 MRPL23Q16540 153 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 DEFB113Q30KQ7 82 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 SMCR5Q8TEV8 140 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 UBE2E2Q96LR5 201 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 LOC107984640A0A0U1RRK4 108 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 TMEM89A2RUT3 159 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 KNCNA6PVL3 124 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 C9orf153Q5TBE3 101 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 ZNF625Q96I27 306 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 Q9UF83 564 aa12.88□□□□□ -0.35
SQSTM1-202ENST00000389805 FAM104AQ969W3 186 aa12.87□□□□□ -0.35
SQSTM1-202ENST00000389805 FAM240AA0A1B0GVK7 77 aa12.87□□□□□ -0.35
SQSTM1-202ENST00000389805 AKAP9Q99996 3911 aa12.87□□□□□ -0.35
SQSTM1-202ENST00000389805 TMEM126AQ9H061 195 aa12.87□□□□□ -0.35
SQSTM1-202ENST00000389805 KHDC1LQ5JSQ8 128 aa12.86□□□□□ -0.35
SQSTM1-202ENST00000389805 C9orf85Q96MD7 179 aa12.86□□□□□ -0.35
SQSTM1-202ENST00000389805 SPANXDQ9BXN6 97 aa12.86□□□□□ -0.35
SQSTM1-202ENST00000389805 SPANXCQ9NY87 97 aa12.86□□□□□ -0.35
SQSTM1-202ENST00000389805 YAE1D1Q9NRH1 226 aa12.86□□□□□ -0.35
SQSTM1-202ENST00000389805 RBMY1A1P0DJD3 496 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 RBMY1CP0DJD4 496 aa12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 RBMY1FQ15415 496 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 HIST2H2BCQ6DN03 193 aa12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 VSIG2Q96IQ7 327 aa12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 MRPS36P82909 103 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 FLNAP21333 2647 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-202ENST00000389805 IGHV1OR15-1A0A075B7D0 117 aa12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 DEFB121Q5J5C9 76 aa12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 SPANXA1Q9NS26 97 aa12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 NIPBLQ6KC79 2804 aaeCLIP12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 IGKV2-29A2NJV5 120 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 DEFB131AP59861 70 aa12.84□□□□□ -0.35
SQSTM1-202ENST00000389805 CITED2Q99967 270 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-202ENST00000389805 C11orf44Q8N8P7 122 aa12.82□□□□□ -0.36
SQSTM1-202ENST00000389805 TENM4Q6N022 2769 aa12.82□□□□□ -0.36
SQSTM1-202ENST00000389805 IGHV3-38A0A0C4DH36 116 aa12.81□□□□□ -0.36
SQSTM1-202ENST00000389805 KRTAP1-3Q8IUG1 177 aa12.81□□□□□ -0.36
SQSTM1-202ENST00000389805 RS1O15537 224 aa12.81□□□□□ -0.36
SQSTM1-202ENST00000389805 C3orf22Q8N5N4 141 aa12.81□□□□□ -0.36
SQSTM1-202ENST00000389805 HERVK_113P63121 156 aa12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 DAZ2Q13117 558 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 DAZ4Q86SG3 579 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 Q8N2B8 174 aa12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 RNF152Q8N8N0 203 aa12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 DAZ3Q9NR90 486 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 CDKN2A-AS1Q9UH64 79 aa12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 NDUFA7O95182 113 aa12.8□□□□□ -0.36
SQSTM1-202ENST00000389805 RBMY1BA6NDE4 496 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-202ENST00000389805 RBMY1EA6NEQ0 496 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-202ENST00000389805 RBMY1DP0C7P1 496 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-202ENST00000389805 WFDC11Q8NEX6 87 aa12.79□□□□□ -0.36
SQSTM1-202ENST00000389805 C2CD3Q4AC94 2353 aa12.78□□□□□ -0.36
SQSTM1-202ENST00000389805 JMJD1CQ15652 2540 aa12.77□□□□□ -0.37
SQSTM1-202ENST00000389805 PYGO1Q9Y3Y4 419 aa12.77□□□□□ -0.37
SQSTM1-202ENST00000389805 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.76□□□□□ -0.37
SQSTM1-202ENST00000389805 TINCRA0A1B0GVN0 87 aa12.76□□□□□ -0.37
SQSTM1-202ENST00000389805 LINC00643Q86TS7 51 aa12.76□□□□□ -0.37
SQSTM1-202ENST00000389805 BAALC-AS2P0C853 105 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 GAGE2AQ6NT46 116 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 LINC00308Q8TCZ7 52 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 Q9H8V8 135 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 A0A1W2PRX2 142 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 Q6ZSN1 163 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 LINC00467Q9BRT7 94 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 EDA2RQ9HAV5 297 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 CSDC2Q9Y534 153 aaKnown RBP12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 ITPR2Q14571 2701 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 COX7A2LO14548 114 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 IMUPQ9GZP8 106 aa12.75□□□□□ -0.37
SQSTM1-202ENST00000389805 UQCRQO14949 82 aa12.74□□□□□ -0.37
SQSTM1-202ENST00000389805 ACYP1P07311 99 aa12.74□□□□□ -0.37
SQSTM1-202ENST00000389805 DNAJC30Q96LL9 226 aa12.74□□□□□ -0.37
SQSTM1-202ENST00000389805 Q9HAA7 133 aa12.74□□□□□ -0.37
SQSTM1-202ENST00000389805 UBE2D4Q9Y2X8 147 aa12.74□□□□□ -0.37
SQSTM1-202ENST00000389805 COX6A2Q02221 97 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms