RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 LEPROTO15243 131 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 SCGB1C2P0DMR2 95 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 HTN1P15515 57 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 XGP55808 180 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 LINC00315P59091 139 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 PLEKHB2Q96CS7 222 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 TENM1Q9UKZ4 2725 aa9.32□□□□□ -0.92
CLK3-201ENST00000345005 J3QQQ9 107 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 SMCPP49901 116 aaPredicted RBP9.31□□□□□ -0.92
CLK3-201ENST00000345005 ZNF415Q09FC8 603 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 MRPL23Q16540 153 aaKnown RBP9.31□□□□□ -0.92
CLK3-201ENST00000345005 A0A0B4J2C4 111 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 CFC1BP0CG36 223 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 CFC1P0CG37 223 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 TMEM170BQ5T4T1 132 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 PTH2Q96A98 100 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 SPANXCQ9NY87 97 aa9.31□□□□□ -0.92
CLK3-201ENST00000345005 SDHAF1A6NFY7 115 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 TSHBP01222 138 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 P0DMU3 169 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 FAM231AP0DMU4 169 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 FAM231CP0DMU5 169 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 PIK3CD-AS1Q5SR53 167 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 SUMO4Q6EEV6 95 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 SPXQ9BT56 116 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 JPT2Q9H910 190 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 SS18L2Q9UHA2 77 aa9.3□□□□□ -0.92
CLK3-201ENST00000345005 F5H697 171 aa9.29□□□□□ -0.92
CLK3-201ENST00000345005 M0R2P5 195 aa9.29□□□□□ -0.92
CLK3-201ENST00000345005 TNFRSF18Q9Y5U5 241 aa9.29□□□□□ -0.92
CLK3-201ENST00000345005 A0A087WWL8 130 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 TCL1BO95988 128 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 GAGE2BQ13066 116 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 GAGE2EQ4V326 116 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 C1orf158Q8N1D5 194 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 TMEM126AQ9H061 195 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 WFDC10AQ9H1F0 79 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 GAGE2DQ9UEU5 116 aa9.28□□□□□ -0.92
CLK3-201ENST00000345005 TMEM223A0PJW6 202 aa9.27□□□□□ -0.93
CLK3-201ENST00000345005 RPL35AP18077 110 aaKnown RBP9.27□□□□□ -0.93
CLK3-201ENST00000345005 C11orf72Q8NBR9 251 aa9.27□□□□□ -0.93
CLK3-201ENST00000345005 WFDC9Q8NEX5 89 aa9.27□□□□□ -0.93
CLK3-201ENST00000345005 CARD19Q96LW7 228 aa9.27□□□□□ -0.93
CLK3-201ENST00000345005 NACAE9PAV3 2078 aa9.27□□□□□ -0.93
CLK3-201ENST00000345005 B5MCH6 92 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 PRM2P04554 102 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 GIG44P09565 113 aaPredicted RBP9.26□□□□□ -0.93
CLK3-201ENST00000345005 NDUFV3P56181 108 aaKnown RBP9.26□□□□□ -0.93
CLK3-201ENST00000345005 ATXN8Q156A1 80 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 KRTAP24-1Q3LI83 254 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 FAM74A4Q5TZK3 123 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 MDFIQ99750 246 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 VWFP04275 2813 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 NOTCH3Q9UM47 2321 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 COL6A5A8TX70 2615 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 IGHV3OR16-12A0A075B7B8 117 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 I3L3M4 83 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 NHLRC4P0CG21 123 aaPredicted RBP9.26□□□□□ -0.93
CLK3-201ENST00000345005 IFITM1P13164 125 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 TTC32Q5I0X7 151 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 SPATA3Q8NHX4 192 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 AMELXQ99217 191 aa9.26□□□□□ -0.93
CLK3-201ENST00000345005 SLC25A20O43772 301 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 IGHV3-33P01772 117 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 HERV-K104P63124 156 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 ZNF56Q15929 161 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 SHISA2Q6UWI4 295 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 ZNRF2Q8NHG8 242 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 EDA2RQ9HAV5 297 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 PYGO1Q9Y3Y4 419 aa9.25□□□□□ -0.93
CLK3-201ENST00000345005 M0QY20 66 aa9.24□□□□□ -0.93
CLK3-201ENST00000345005 SNCGO76070 127 aa9.24□□□□□ -0.93
CLK3-201ENST00000345005 TMEM263Q8WUH6 116 aaKnown RBP9.24□□□□□ -0.93
CLK3-201ENST00000345005 RPL39P62891 51 aaKnown RBP9.24□□□□□ -0.93
CLK3-201ENST00000345005 C20orf203Q8NBC4 194 aa9.24□□□□□ -0.93
CLK3-201ENST00000345005 CSNK1G2-AS1Q8NCQ2 148 aa9.24□□□□□ -0.93
CLK3-201ENST00000345005 TRBV30A0A0K0K1B3 111 aa9.23□□□□□ -0.93
CLK3-201ENST00000345005 A4D1N5 150 aa9.23□□□□□ -0.93
CLK3-201ENST00000345005 ANKRD29Q8N6D5 301 aa9.23□□□□□ -0.93
CLK3-201ENST00000345005 WIPF1O43516 503 aa9.22□□□□□ -0.93
CLK3-201ENST00000345005 COX6CP09669 75 aa9.22□□□□□ -0.93
CLK3-201ENST00000345005 TSPEAR-AS2P59090 65 aa9.22□□□□□ -0.93
CLK3-201ENST00000345005 C3orf56Q8N813 242 aa9.22□□□□□ -0.93
CLK3-201ENST00000345005 IL17DQ8TAD2 202 aa9.22□□□□□ -0.93
CLK3-201ENST00000345005 RPL13AP40429 203 aaKnown RBP9.21□□□□□ -0.93
CLK3-201ENST00000345005 C16orf74Q96GX8 76 aa9.21□□□□□ -0.93
CLK3-201ENST00000345005 ANK2Q01484 3957 aa9.21□□□□□ -0.94
CLK3-201ENST00000345005 C9JAW5 83 aa9.21□□□□□ -0.94
CLK3-201ENST00000345005 RS1O15537 224 aa9.21□□□□□ -0.94
CLK3-201ENST00000345005 EMP1P54849 157 aa9.21□□□□□ -0.94
CLK3-201ENST00000345005 ZNF22P17026 224 aaPredicted RBP9.2□□□□□ -0.94
CLK3-201ENST00000345005 MUSTN1Q8IVN3 82 aa9.2□□□□□ -0.94
CLK3-201ENST00000345005 TRBV10-2A0A0K0K1G8 114 aa9.19□□□□□ -0.94
CLK3-201ENST00000345005 DAZ2Q13117 558 aaKnown RBP9.19□□□□□ -0.94
CLK3-201ENST00000345005 Q1RN00 199 aa9.19□□□□□ -0.94
CLK3-201ENST00000345005 SFTA2Q6UW10 78 aa9.19□□□□□ -0.94
CLK3-201ENST00000345005 STAB1Q9NY15 2570 aa9.19□□□□□ -0.94
CLK3-201ENST00000345005 TRGV1A0A0A0MS02 117 aa9.19□□□□□ -0.94
CLK3-201ENST00000345005 MRPS36P82909 103 aaKnown RBP9.19□□□□□ -0.94
CLK3-201ENST00000345005 LINC01620Q4KN68 170 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 663.6 ms