RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-201ENST00000328923 MED14OSP0DP75 135 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 FBXL19-AS1Q494R0 122 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 NDUFA12Q9UI09 145 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 SPTAN1Q13813 2472 aaKnown RBP8.7□□□□□ -1.02
SHMT2-201ENST00000328923 UTP20O75691 2785 aaKnown RBP8.7□□□□□ -1.02
SHMT2-201ENST00000328923 MAP1AP78559 2803 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-201ENST00000328923 HRNRQ86YZ3 2850 aaPredicted RBP8.7□□□□□ -1.02
SHMT2-201ENST00000328923 GRNP28799 593 aaKnown RBP8.7□□□□□ -1.02
SHMT2-201ENST00000328923 KLK9Q2XQG4 91 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 PRR9Q5T870 116 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 FAM222AQ5U5X8 452 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 LINC01560Q8TB33 94 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 KLK9Q9UKQ9 250 aa8.7□□□□□ -1.02
SHMT2-201ENST00000328923 SPTBN1Q01082 2364 aaKnown RBP8.69□□□□□ -1.02
SHMT2-201ENST00000328923 IGHV3-23P01764 117 aa8.69□□□□□ -1.02
SHMT2-201ENST00000328923 PRB3Q04118 309 aaPredicted RBP8.69□□□□□ -1.02
SHMT2-201ENST00000328923 LY6G5BQ8NDX9 201 aa8.69□□□□□ -1.02
SHMT2-201ENST00000328923 USP9YO00507 2555 aaPredicted RBP8.68□□□□□ -1.02
SHMT2-201ENST00000328923 POLR2KP53803 58 aaKnown RBP8.68□□□□□ -1.02
SHMT2-201ENST00000328923 ADORA2A-AS1P86434 159 aa8.68□□□□□ -1.02
SHMT2-201ENST00000328923 PHLDA3Q9Y5J5 127 aa8.68□□□□□ -1.02
SHMT2-201ENST00000328923 CELSR1Q9NYQ6 3014 aa8.68□□□□□ -1.02
SHMT2-201ENST00000328923 USP9XQ93008 2570 aaPredicted RBP8.68□□□□□ -1.02
SHMT2-201ENST00000328923 S100A4P26447 101 aaKnown RBP8.68□□□□□ -1.02
SHMT2-201ENST00000328923 PMAIP1Q13794 54 aa8.68□□□□□ -1.02
SHMT2-201ENST00000328923 IGHV3-35A0A0C4DH35 117 aa8.67□□□□□ -1.02
SHMT2-201ENST00000328923 TRBV7-6A0A0J9YX20 115 aa8.67□□□□□ -1.02
SHMT2-201ENST00000328923 TIMM17BO60830 172 aa8.67□□□□□ -1.02
SHMT2-201ENST00000328923 IGF1P05019 195 aa8.67□□□□□ -1.02
SHMT2-201ENST00000328923 TEX15Q9BXT5 2789 aa8.67□□□□□ -1.02
SHMT2-201ENST00000328923 ODF3BA8MYP8 253 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 HOXD3P31249 432 aaPredicted RBP8.66□□□□□ -1.02
SHMT2-201ENST00000328923 Q8N6K4 173 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 Q96MF0 132 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 TRBV27A0A0K0K1C4 114 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 VCYO14598 125 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 IGHV1-69P01742 117 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 CCKP06307 115 aa8.66□□□□□ -1.02
SHMT2-201ENST00000328923 RBM3P98179 157 aaKnown RBP8.66□□□□□ -1.02
SHMT2-201ENST00000328923 CLPSL1A2RUU4 121 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 BPESC1Q9GZL8 116 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 IGHV4OR15-8A0A075B7B6 117 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 A0A087WW49 117 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 IGHV3-66A0A0C4DH42 116 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 MPLKIPQ8TAP9 179 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 SNURFQ9Y675 71 aa8.65□□□□□ -1.02
SHMT2-201ENST00000328923 SUMO4Q6EEV6 95 aa8.64□□□□□ -1.03
SHMT2-201ENST00000328923 FAM110DQ8TAY7 271 aaPredicted RBP8.64□□□□□ -1.03
SHMT2-201ENST00000328923 TRAV21A0A0B4J279 112 aa8.64□□□□□ -1.03
SHMT2-201ENST00000328923 LINC00315P59091 139 aa8.64□□□□□ -1.03
SHMT2-201ENST00000328923 MRPS36P82909 103 aaKnown RBP8.64□□□□□ -1.03
SHMT2-201ENST00000328923 MUC4Q99102 2169 aa8.64□□□□□ -1.03
SHMT2-201ENST00000328923 IGHV1-58A0A0C4DH39 117 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 RMI2Q96E14 147 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 U3KQE9 123 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 NOTCH2Q04721 2471 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 NBPF19A0A087WUL8 3843 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 MED13LQ71F56 2210 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 ANKHD1Q8IWZ3 2542 aaKnown RBP8.63□□□□□ -1.03
SHMT2-201ENST00000328923 F8WEM9 126 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 C15orf32Q32M92 178 aa8.63□□□□□ -1.03
SHMT2-201ENST00000328923 IGLV4-3A0A075B6K6 122 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 IGHV7-81A0A0B4J1V7 117 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 SNRPD3P62318 126 aaKnown RBP8.62□□□□□ -1.03
SHMT2-201ENST00000328923 VMO1Q7Z5L0 202 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 ITLN2Q8WWU7 325 aaPredicted RBP8.62□□□□□ -1.03
SHMT2-201ENST00000328923 AKAP6Q13023 2319 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 CENPEQ02224 2701 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 IGHV3OR16-13A0A075B7E8 117 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 IGHV3-74A0A0B4J1X5 117 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 FAM229BQ4G0N7 80 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 ZFAND2AQ8N6M9 145 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 VSIG2Q96IQ7 327 aa8.62□□□□□ -1.03
SHMT2-201ENST00000328923 A0A087WWL8 130 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 TMEM89A2RUT3 159 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 F5H697 171 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 LYNX1G3V0Z9 82 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 GNRH2O43555 120 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 LYNX1P0DP58 116 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 SOSTDC1Q6X4U4 206 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 KIF25-AS1Q9Y6Z4 181 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 WNK2Q9Y3S1 2297 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 ENHOQ6UWT2 76 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 APRG1Q8IVJ8 170 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 LINC00308Q8TCZ7 52 aa8.61□□□□□ -1.03
SHMT2-201ENST00000328923 RPL11P62913 178 aaKnown RBP8.6□□□□□ -1.03
SHMT2-201ENST00000328923 RNASE13Q5GAN3 156 aaKnown RBP8.6□□□□□ -1.03
SHMT2-201ENST00000328923 CCDC140Q96MF4 163 aa8.6□□□□□ -1.03
SHMT2-201ENST00000328923 UNC79Q9P2D8 2635 aa8.6□□□□□ -1.03
SHMT2-201ENST00000328923 NCR3O14931 201 aa8.59□□□□□ -1.03
SHMT2-201ENST00000328923 MINOS1Q5TGZ0 78 aa8.59□□□□□ -1.03
SHMT2-201ENST00000328923 MINOS1-NBL1R4GNA1 71 aa8.59□□□□□ -1.03
SHMT2-201ENST00000328923 RNASE3P12724 160 aaKnown RBP8.59□□□□□ -1.03
SHMT2-201ENST00000328923 KLKP1Q107X0 134 aa8.59□□□□□ -1.03
SHMT2-201ENST00000328923 MYO9AB2RTY4 2548 aa8.59□□□□□ -1.03
SHMT2-201ENST00000328923 HIVEP3Q5T1R4 2406 aa8.59□□□□□ -1.03
SHMT2-201ENST00000328923 TRBV6-5A0A0K0K1A5 114 aa8.58□□□□□ -1.04
SHMT2-201ENST00000328923 Q8N9W7 124 aa8.58□□□□□ -1.04
SHMT2-201ENST00000328923 COPS9Q8WXC6 57 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms