RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 Q6ZSR3 168 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 UPK3BQ9BT76 320 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 EP400Q96L91 3159 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 ROS1P08922 2347 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 C19orf71A6NCJ1 209 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 ENHOQ6UWT2 76 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 MED13Q9UHV7 2174 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 MIAQ16674 131 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 TCL1BO95988 128 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 MAPKAPK5-AS1Q8N8E1 139 aa5.69□□□□□ -1.5
SCN9A-201ENST00000303354 LOC107984640A0A0U1RRK4 108 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 M0QY20 66 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 ARHGAP21Q5T5U3 1957 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 USP17L23D6RBM5 183 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 C11orf21Q9P2W6 132 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 ABCA1O95477 2261 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 LINC01545Q5VT33 79 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 KIR2DL5BQ8NHK3 375 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 NCOA6Q14686 2063 aaPredicted RBP5.68□□□□□ -1.5
SCN9A-201ENST00000303354 TMEM258P61165 79 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 LELP1Q5T871 98 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 C3orf22Q8N5N4 141 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 TRBV6-4A0A1B0GX49 114 aa5.68□□□□□ -1.5
SCN9A-201ENST00000303354 TMEM223A0PJW6 202 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 NUP210LQ5VU65 1888 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 CRIP3Q6Q6R5 217 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 MALRD1Q5VYJ5 2156 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 C10orf91Q5T1B1 145 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 UNQ6190/PRO20217Q6UXQ8 127 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 MBD6Q96DN6 1003 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 PLCE1Q9P212 2302 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 CCKP06307 115 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 SPINK1P00995 79 aa5.67□□□□□ -1.5
SCN9A-201ENST00000303354 RNASE3P12724 160 aaKnown RBP5.67□□□□□ -1.5
SCN9A-201ENST00000303354 ZNF22P17026 224 aaPredicted RBP5.67□□□□□ -1.5
SCN9A-201ENST00000303354 DSCAML1Q8TD84 2053 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 COX6A2Q02221 97 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 GVINP1Q7Z2Y8 2422 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 WNK2Q9Y3S1 2297 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 IGLV4-60A0A075B6I1 120 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 CYSRT1A8MQ03 144 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 TANC2Q9HCD6 1990 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 RNF185Q96GF1 192 aa5.66□□□□□ -1.5
SCN9A-201ENST00000303354 MRGPRG-AS1Q2M3A8 158 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 ODF3L2Q3SX64 289 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 OBSL1O75147 1896 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 TRBV6-5A0A0K0K1A5 114 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 JMJD7-PLA2G4BH0Y9G9 81 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 PCNX2A6NKB5 2137 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 SNURFQ9Y675 71 aa5.65□□□□□ -1.5
SCN9A-201ENST00000303354 TSHBP01222 138 aa5.65□□□□□ -1.51
SCN9A-201ENST00000303354 IGLV1-40P01703 118 aa5.65□□□□□ -1.51
SCN9A-201ENST00000303354 FSHBP01225 129 aa5.65□□□□□ -1.51
SCN9A-201ENST00000303354 LINC00308Q8TCZ7 52 aa5.65□□□□□ -1.51
SCN9A-201ENST00000303354 CELA1Q9UNI1 258 aa5.65□□□□□ -1.51
SCN9A-201ENST00000303354 Q6ZQY7 126 aa5.64□□□□□ -1.51
SCN9A-201ENST00000303354 Q6ZVQ6 151 aa5.64□□□□□ -1.51
SCN9A-201ENST00000303354 SPATA12Q7Z6I5 190 aa5.64□□□□□ -1.51
SCN9A-201ENST00000303354 IGHV6-1A0A0B4J1U7 121 aa5.64□□□□□ -1.51
SCN9A-201ENST00000303354 IGLC6P0CF74 106 aa5.64□□□□□ -1.51
SCN9A-201ENST00000303354 SPANXCQ9NY87 97 aa5.64□□□□□ -1.51
SCN9A-201ENST00000303354 LINC00694P0DN24 101 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 SMIM11BQ8TCY0 68 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 MDFIQ99750 246 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 EBI3Q14213 229 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 CD164L2Q6UWJ8 174 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 COL5A1P20908 1838 aaPredicted RBP5.63□□□□□ -1.51
SCN9A-201ENST00000303354 Q6ZSN1 163 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 LTBP2Q14767 1821 aa5.63□□□□□ -1.51
SCN9A-201ENST00000303354 A8MTW9 85 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 CHTF8P0CG12 524 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 Q8N6K4 173 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 BRK1Q8WUW1 75 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 TAX1BP3O14907 124 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 EIF4EBP1Q13541 118 aaPredicted RBP5.62□□□□□ -1.51
SCN9A-201ENST00000303354 PCDH15Q96QU1 1955 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 M0R378 163 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 ESRGQ1W209 222 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 ODF3Q96PU9 254 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 KIR2DL5BA0A0G2JN68 375 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 KIR2DL5BA0A0G2JPC4 375 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 KIR2DL5AQ8N109 375 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 PYGO1Q9Y3Y4 419 aa5.62□□□□□ -1.51
SCN9A-201ENST00000303354 KIAA1549LQ6ZVL6 1849 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 KRTAP24-1Q3LI83 254 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 SBSPONQ8IVN8 264 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 C10orf25Q5T742 122 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 NDUFV3P56181 108 aaKnown RBP5.61□□□□□ -1.51
SCN9A-201ENST00000303354 C20orf197Q8N268 126 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 TRIAP1O43715 76 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 TEN1Q86WV5 123 aa5.61□□□□□ -1.51
SCN9A-201ENST00000303354 C11orf1Q9H5F2 150 aa5.6□□□□□ -1.51
SCN9A-201ENST00000303354 ZNF580Q9UK33 172 aa5.6□□□□□ -1.51
SCN9A-201ENST00000303354 PRRC2AP48634 2157 aaKnown RBP5.6□□□□□ -1.51
SCN9A-201ENST00000303354 PRLHP81277 87 aa5.6□□□□□ -1.51
SCN9A-201ENST00000303354 SPANXB1Q9NS25 103 aaPredicted RBP5.6□□□□□ -1.51
SCN9A-201ENST00000303354 ZNF706Q9Y5V0 76 aaPredicted RBP5.6□□□□□ -1.51
SCN9A-201ENST00000303354 RIF1Q5UIP0 2472 aaKnown RBP5.6□□□□□ -1.51
SCN9A-201ENST00000303354 RNASE8Q8TDE3 154 aaKnown RBP5.6□□□□□ -1.51
SCN9A-201ENST00000303354 PCNX1Q96RV3 2341 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 248.5 ms