RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 SLC25A34Q6PIV7 304 aa9.28□□□□□ -0.92
SLIRP-201ENST00000238688 NFE4Q86UQ8 179 aa9.28□□□□□ -0.92
SLIRP-201ENST00000238688 AMELXQ99217 191 aa9.28□□□□□ -0.92
SLIRP-201ENST00000238688 MRPS16Q9Y3D3 137 aaKnown RBP9.28□□□□□ -0.92
SLIRP-201ENST00000238688 IGLV4-3A0A075B6K6 122 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 SIVA1O15304 175 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 HERVK_113P61574 105 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 SEC11AP67812 179 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 C2orf88Q9BSF0 95 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 TMEM243Q9BU79 118 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 UBE2D4Q9Y2X8 147 aa9.27□□□□□ -0.93
SLIRP-201ENST00000238688 hDV102S1A0JD36 115 aa9.26□□□□□ -0.93
SLIRP-201ENST00000238688 GAGE12JA6NER3 117 aa9.26□□□□□ -0.93
SLIRP-201ENST00000238688 GAGE1Q13065 139 aa9.26□□□□□ -0.93
SLIRP-201ENST00000238688 GAGE4Q13068 117 aa9.26□□□□□ -0.93
SLIRP-201ENST00000238688 GAGE5Q13069 117 aa9.26□□□□□ -0.93
SLIRP-201ENST00000238688 GAGE13Q4V321 117 aa9.26□□□□□ -0.93
SLIRP-201ENST00000238688 LINC00587B1AMM8 73 aa9.25□□□□□ -0.93
SLIRP-201ENST00000238688 PAX4O43316 350 aa9.25□□□□□ -0.93
SLIRP-201ENST00000238688 ZC2HC1BQ5TFG8 222 aa9.25□□□□□ -0.93
SLIRP-201ENST00000238688 DGAT2L7PQ6IED9 249 aa9.25□□□□□ -0.93
SLIRP-201ENST00000238688 EPPK1P58107 5090 aaKnown RBP9.25□□□□□ -0.93
SLIRP-201ENST00000238688 ALMS1Q8TCU4 4167 aa9.25□□□□□ -0.93
SLIRP-201ENST00000238688 TRBV6-8A0A0A6YYG3 113 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 C11orf86A6NJI1 115 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 UBE2L6O14933 153 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 HNRNPA3P51991 378 aaKnown RBP9.24□□□□□ -0.93
SLIRP-201ENST00000238688 TIRAPP58753 221 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 FAM19A3Q7Z5A8 133 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 BOD1L2Q8IYS8 172 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 ATP6V0E2Q8NHE4 81 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 PHLDA1Q8WV24 401 aaPredicted RBP9.24□□□□□ -0.93
SLIRP-201ENST00000238688 TMEM101Q96IK0 257 aa9.24□□□□□ -0.93
SLIRP-201ENST00000238688 E9PLD3 99 aa9.23□□□□□ -0.93
SLIRP-201ENST00000238688 GYPEP15421 78 aa9.23□□□□□ -0.93
SLIRP-201ENST00000238688 MRPL23Q16540 153 aaKnown RBP9.23□□□□□ -0.93
SLIRP-201ENST00000238688 MAJINQ3KP22 176 aa9.23□□□□□ -0.93
SLIRP-201ENST00000238688 Q9UF83 564 aa9.23□□□□□ -0.93
SLIRP-201ENST00000238688 IGLV4-69A0A075B6H9 119 aa9.22□□□□□ -0.93
SLIRP-201ENST00000238688 TINCRA0A1B0GVN0 87 aa9.22□□□□□ -0.93
SLIRP-201ENST00000238688 FGF6P10767 208 aa9.22□□□□□ -0.93
SLIRP-201ENST00000238688 AMMECR1LQ6DCA0 310 aa9.22□□□□□ -0.93
SLIRP-201ENST00000238688 OR5A1Q8NGJ0 315 aa9.22□□□□□ -0.93
SLIRP-201ENST00000238688 IGHV3-38A0A0C4DH36 116 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 A0A1B0GUV1 79 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 CCL25O15444 150 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 ANKRD39Q53RE8 183 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 NTM-AS1Q6ZSK4 140 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 C14orf144Q96I85 54 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 HIGD1BQ9P298 99 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 ICOSQ9Y6W8 199 aa9.21□□□□□ -0.94
SLIRP-201ENST00000238688 M0R143 59 aa9.2□□□□□ -0.94
SLIRP-201ENST00000238688 STPG4Q8N801 248 aa9.2□□□□□ -0.94
SLIRP-201ENST00000238688 CHAC1Q9BUX1 264 aa9.2□□□□□ -0.94
SLIRP-201ENST00000238688 CELA1Q9UNI1 258 aa9.2□□□□□ -0.94
SLIRP-201ENST00000238688 BIRC6Q9NR09 4857 aa9.19□□□□□ -0.94
SLIRP-201ENST00000238688 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.19□□□□□ -0.94
SLIRP-201ENST00000238688 IGKV2-29A2NJV5 120 aaPredicted RBP9.19□□□□□ -0.94
SLIRP-201ENST00000238688 HERVK_113P63121 156 aa9.19□□□□□ -0.94
SLIRP-201ENST00000238688 CDC42SE2Q9NRR3 84 aa9.19□□□□□ -0.94
SLIRP-201ENST00000238688 IGLV5-45A0A087WSX0 123 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 F5H768 121 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 H3BRM9 83 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 NMUP48645 174 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 C12orf74Q32Q52 190 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 FAM104AQ969W3 186 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 PLEKHB2Q96CS7 222 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 VSIG2Q96IQ7 327 aa9.18□□□□□ -0.94
SLIRP-201ENST00000238688 LOC100131303A0A0U1RQF7 123 aa9.17□□□□□ -0.94
SLIRP-201ENST00000238688 UBE2D1P51668 147 aa9.17□□□□□ -0.94
SLIRP-201ENST00000238688 Q6ZUT4 128 aa9.17□□□□□ -0.94
SLIRP-201ENST00000238688 GEMIN7Q9H840 131 aaKnown RBP9.17□□□□□ -0.94
SLIRP-201ENST00000238688 A0A0J9YWU9 116 aa9.16□□□□□ -0.94
SLIRP-201ENST00000238688 DEFB4AO15263 64 aa9.16□□□□□ -0.94
SLIRP-201ENST00000238688 TAL2Q16559 108 aa9.16□□□□□ -0.94
SLIRP-201ENST00000238688 TMEM170BQ5T4T1 132 aa9.16□□□□□ -0.94
SLIRP-201ENST00000238688 CHCHD5Q9BSY4 110 aa9.16□□□□□ -0.94
SLIRP-201ENST00000238688 KMT2AQ03164 3969 aa9.15□□□□□ -0.94
SLIRP-201ENST00000238688 TMEM223A0PJW6 202 aa9.15□□□□□ -0.94
SLIRP-201ENST00000238688 ZNF22P17026 224 aaPredicted RBP9.15□□□□□ -0.94
SLIRP-201ENST00000238688 CTAG1AP78358 180 aa9.15□□□□□ -0.94
SLIRP-201ENST00000238688 LELP1Q5T871 98 aa9.15□□□□□ -0.94
SLIRP-201ENST00000238688 C11orf45Q8TAV5 145 aa9.15□□□□□ -0.94
SLIRP-201ENST00000238688 LEPROTO15243 131 aa9.14□□□□□ -0.95
SLIRP-201ENST00000238688 HSD52Q0P140 79 aa9.14□□□□□ -0.95
SLIRP-201ENST00000238688 OPRPNQ99935 248 aaPredicted RBP9.14□□□□□ -0.95
SLIRP-201ENST00000238688 IGKV2D-26A0A0A0MRZ7 120 aa9.13□□□□□ -0.95
SLIRP-201ENST00000238688 A0A0J9YXV3 536 aa9.13□□□□□ -0.95
SLIRP-201ENST00000238688 MYMXA0A1B0GTQ4 84 aa9.13□□□□□ -0.95
SLIRP-201ENST00000238688 DEFB104AQ8WTQ1 72 aa9.13□□□□□ -0.95
SLIRP-201ENST00000238688 CEMP1Q6PRD7 247 aaPredicted RBP9.12□□□□□ -0.95
SLIRP-201ENST00000238688 SFTA2Q6UW10 78 aa9.12□□□□□ -0.95
SLIRP-201ENST00000238688 C2orf91Q6ZV80 131 aa9.12□□□□□ -0.95
SLIRP-201ENST00000238688 PCP2Q8IVA1 136 aa9.12□□□□□ -0.95
SLIRP-201ENST00000238688 LINC01561Q8N1V8 128 aa9.12□□□□□ -0.95
SLIRP-201ENST00000238688 C15orf53Q8NAA6 179 aa9.12□□□□□ -0.95
SLIRP-201ENST00000238688 SNHG12Q9BXW3 62 aa9.12□□□□□ -0.95
SLIRP-201ENST00000238688 A0A096LPF7 62 aa9.11□□□□□ -0.95
SLIRP-201ENST00000238688 TRAV10A0A0B4J240 114 aa9.11□□□□□ -0.95
SLIRP-201ENST00000238688 TRAV8-6A0A0B4J262 113 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms