RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ATP8A1Q9Y2Q0 1164 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ANKRD30BQ9BXX2 1392 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 AK9Q5TCS8 1911 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 LRRIQ3A6PVS8 624 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 B4DLN1 442 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 IMMTQ16891 758 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 MIS18BP1Q6P0N0 1132 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 IQCF2Q8IXL9 164 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 RASSF8Q8NHQ8 419 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 LEO1Q8WVC0 666 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 SREK1Q8WXA9 508 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 P3H4Q92791 437 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 FUCA2Q9BTY2 467 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 OSBPL5Q9H0X9 879 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 SH2B1Q9NRF2 756 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 TFIP11Q9UBB9 837 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 SUN2Q9UH99 717 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 L1RE1Q9UN81 338 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ATP5JP18859 108 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 INHBEP58166 350 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ZC3H6P61129 1189 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 EXOSC9Q06265 439 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 USP6NLQ92738 828 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 HAUS1Q96CS2 278 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 IL17RAQ96F46 866 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 RBM17Q96I25 401 aaKnown RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 IWS1Q96ST2 819 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 NOD2Q9HC29 1040 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 KCND1Q9NSA2 647 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 FAM200BP0CF97 657 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ANKLE2Q86XL3 938 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ARHGAP18Q8N392 663 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 SDR16C5Q8N3Y7 309 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 NAPGQ99747 312 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 SLC39A2Q9NP94 309 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 CWC25Q9NXE8 425 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-216ENST00000637968 ITM2BQ9Y287 266 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 C15orf41Q9Y2V0 281 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 PARP3Q9Y6F1 533 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 CD109Q6YHK3 1445 aa6.43□□□□□ -1.38
SCN1A-216ENST00000637968 GRIN2AQ12879 1464 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 TOP2BQ02880 1626 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 EPRSP07814 1512 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ARHGAP5Q13017 1502 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 SPDYE3A6NKU9 549 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 M0R2C6 588 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 DIAPH2O60879 1101 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ZKSCAN1P17029 563 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ATP1A2P50993 1020 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 SEPT2Q15019 361 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 CCAR1Q8IX12 1150 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 USP33Q8TEY7 942 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 LZTFL1Q9NQ48 299 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ABCF2Q9UG63 623 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 UNC13AQ9UPW8 1703 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 RNF8O76064 485 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ANP32DO95626 131 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 NEK2P51955 445 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ADCY1Q08828 1119 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 PDCLQ13371 301 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 INAQ16352 499 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 GKAP1Q5VSY0 366 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 YTHDF3Q7Z739 585 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 RPAP2Q8IXW5 612 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 XPO4Q9C0E2 1151 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 USH1CQ9Y6N9 552 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 U3KPZ7 1027 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 URB2Q14146 1524 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 MAP3K5Q99683 1374 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 CASKIN1Q8WXD9 1431 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 LSM1O15116 133 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ZNF24P17028 368 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 SDSP20132 328 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ATP4AP20648 1035 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC6Q16204 474 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 CFAP58Q5T655 872 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 NUTM2DQ5VT03 806 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 TXNDC2Q86VQ3 553 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 GALNT15Q8N3T1 639 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 RNF10Q8N5U6 811 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 CLIC6Q96NY7 704 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 NR1H4Q96RI1 486 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 ZBTB40Q9NUA8 1239 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 LARSQ9P2J5 1176 aaKnown RBP6.42□□□□□ -1.38
SCN1A-216ENST00000637968 CDHR2Q9BYE9 1310 aa6.42□□□□□ -1.38
SCN1A-216ENST00000637968 RAPGEF3O95398 923 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 GGCXP38435 758 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 TRIM29Q14134 588 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 CDCA2Q69YH5 1023 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 RSRC2Q7L4I2 434 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 MAATS1Q7Z4T9 603 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 API5Q9BZZ5 524 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 BZW2Q9Y6E2 419 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 CUTAO60888 179 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 ME1P48163 572 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 FAM160A1Q05DH4 1040 aa6.41□□□□□ -1.38
SCN1A-216ENST00000637968 SND1Q7KZF4 910 aaKnown RBP eCLIP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 PPANQ9NQ55 473 aaKnown RBP6.41□□□□□ -1.38
SCN1A-216ENST00000637968 GALNT8Q9NY28 637 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms