RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SLF2Q8IX21 1173 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 CHMP4BQ9H444 224 aaKnown RBP14.28□□□□□ -0.12
CLN3-257ENST00000637110 ZCCHC17Q9NP64 241 aaKnown RBP14.28□□□□□ -0.12
CLN3-257ENST00000637110 SALL1Q9NSC2 1324 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 USP40Q9NVE5 1235 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 DAGLAQ9Y4D2 1042 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 FPGT-TNNI3KV9GXZ4 949 aa14.28□□□□□ -0.12
CLN3-257ENST00000637110 GJB1P08034 283 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 HOXD10P28358 340 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 TCP10Q12799 353 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 CDC42EP5Q6NZY7 148 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 SPATA5Q8NB90 893 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 HOOK2Q96ED9 719 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 YTHDC1Q96MU7 727 aaKnown RBP14.27□□□□□ -0.13
CLN3-257ENST00000637110 HMG20BQ9P0W2 317 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 CSADQ9Y600 493 aa14.27□□□□□ -0.13
CLN3-257ENST00000637110 LAMA3Q16787 3333 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 MTFR1Q15390 333 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 GPR153Q6NV75 609 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 UBE2Q1Q7Z7E8 422 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 FAM83AQ86UY5 434 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 CDAN1Q8IWY9 1227 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 FAM43AQ8N2R8 423 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 RAET1EQ8TD07 263 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 TEPSINQ96N21 525 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 DBNDD2Q9BQY9 259 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 ARHGAP39Q9C0H5 1083 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 GPR108Q9NPR9 543 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 RAI14Q9P0K7 980 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 EXOC6BQ9Y2D4 811 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 NOP58Q9Y2X3 529 aaKnown RBP14.26□□□□□ -0.13
CLN3-257ENST00000637110 ZSWIM8A7E2V4 1837 aa14.26□□□□□ -0.13
CLN3-257ENST00000637110 APBB1O00213 710 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 SOX1O00570 391 aaPredicted RBP14.25□□□□□ -0.13
CLN3-257ENST00000637110 EVI5O60447 810 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 HMMRO75330 724 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 CETPP11597 493 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 GRK4P32298 578 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 MAP3K9P80192 1104 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 FKBP1CQ5VVH2 108 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 PI16Q6UXB8 463 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 TBC1D9Q6ZT07 1266 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 ERC1Q8IUD2 1116 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 LRCH3Q96II8 777 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 CCDC8Q9H0W5 538 aaPredicted RBP14.25□□□□□ -0.13
CLN3-257ENST00000637110 SNRKQ9NRH2 765 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 LRP2BPQ9P2M1 347 aa14.25□□□□□ -0.13
CLN3-257ENST00000637110 PDS5AQ29RF7 1337 aaKnown RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 FARP2O94887 1054 aaPredicted RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 CCL5P13501 91 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 ARID4AP29374 1257 aaPredicted RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 UBXN2AP68543 259 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 GSTO1P78417 241 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 VGLL4Q14135 290 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 HSP90AB4PQ58FF6 505 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 DCAF15Q66K64 600 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 ZSCAN29Q8IWY8 852 aaPredicted RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 RPAP2Q8IXW5 612 aaPredicted RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 FAM151AQ8WW52 585 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 TRIM47Q96LD4 638 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 RNF208Q9H0X6 261 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 BIN2Q9UBW5 565 aaPredicted RBP14.24□□□□□ -0.13
CLN3-257ENST00000637110 SRRDQ9UH36 339 aa14.24□□□□□ -0.13
CLN3-257ENST00000637110 AK9Q5TCS8 1911 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 ZBTB22O15209 634 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 LDHCP07864 332 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 CAPN2P17655 700 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 MCAMP43121 646 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 BTDP43251 543 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 MECOMQ03112 1051 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 MIGA2Q7L4E1 593 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 AACSQ86V21 672 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 CNKSR2Q8WXI2 1034 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 NOL10Q9BSC4 688 aaKnown RBP14.23□□□□□ -0.13
CLN3-257ENST00000637110 STXBP5LQ9Y2K9 1186 aa14.23□□□□□ -0.13
CLN3-257ENST00000637110 MROH7-TTC4A0A0A0MT08 1334 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 MYH2Q9UKX2 1941 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 PSMC4P43686 418 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 NFIAQ12857 509 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 SNAPC2Q13487 334 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 PICALMQ13492 652 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 PDE3AQ14432 1141 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 C20orf194Q5TEA3 1177 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 DEFB123Q8N688 67 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLN3-257ENST00000637110 WRNIP1Q96S55 665 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 ZNF341Q9BYN7 854 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 IL1RAPL2Q9NP60 686 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 ZBTB40Q9NUA8 1239 aa14.22□□□□□ -0.13
CLN3-257ENST00000637110 SPDYE5A6NIY4 337 aa14.21□□□□□ -0.13
CLN3-257ENST00000637110 BTBD19C9JJ37 291 aa14.21□□□□□ -0.13
CLN3-257ENST00000637110 FMNL1O95466 1100 aaPredicted RBP14.21□□□□□ -0.13
CLN3-257ENST00000637110 RGS3P49796 1198 aa14.21□□□□□ -0.13
CLN3-257ENST00000637110 U2AF1L4Q8WU68 220 aaKnown RBP14.21□□□□□ -0.13
CLN3-257ENST00000637110 EAF2Q96CJ1 260 aaPredicted RBP14.21□□□□□ -0.13
CLN3-257ENST00000637110 TLR7Q9NYK1 1049 aaKnown RBP14.21□□□□□ -0.13
CLN3-257ENST00000637110 STAP2Q9UGK3 403 aa14.21□□□□□ -0.13
CLN3-257ENST00000637110 DBNLQ9UJU6 430 aaKnown RBP14.21□□□□□ -0.13
CLN3-257ENST00000637110 GAKO14976 1311 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms