RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 THSD7BQ9C0I4 1608 aa25.09■■□□□ 1.61
CLN3-240ENST00000631023 SLC10A3P09131 477 aa25.09■■□□□ 1.61
CLN3-240ENST00000631023 PDE6AP16499 860 aa25.09■■□□□ 1.61
CLN3-240ENST00000631023 ZFPM1Q8IX07 1006 aa25.09■■□□□ 1.61
CLN3-240ENST00000631023 DDX4Q9NQI0 724 aaKnown RBP25.09■■□□□ 1.61
CLN3-240ENST00000631023 OTOFQ9HC10 1997 aa25.09■■□□□ 1.61
CLN3-240ENST00000631023 GLRX3O76003 335 aaKnown RBP25.08■■□□□ 1.61
CLN3-240ENST00000631023 RASAL3Q86YV0 1011 aa25.08■■□□□ 1.61
CLN3-240ENST00000631023 TSHZ3Q63HK5 1081 aa25.07■■□□□ 1.6
CLN3-240ENST00000631023 B4GALNT3Q6L9W6 998 aa25.07■■□□□ 1.6
CLN3-240ENST00000631023 ZSCAN25Q6NSZ9 544 aa25.07■■□□□ 1.6
CLN3-240ENST00000631023 MIGA1Q8NAN2 632 aa25.07■■□□□ 1.6
CLN3-240ENST00000631023 OTUD7AQ8TE49 926 aaPredicted RBP25.07■■□□□ 1.6
CLN3-240ENST00000631023 CSRNP1Q96S65 589 aa25.07■■□□□ 1.6
CLN3-240ENST00000631023 MYH1P12882 1939 aa25.07■■□□□ 1.6
CLN3-240ENST00000631023 MAP3K9P80192 1104 aa25.06■■□□□ 1.6
CLN3-240ENST00000631023 MIGA2Q7L4E1 593 aa25.06■■□□□ 1.6
CLN3-240ENST00000631023 ZNF341Q9BYN7 854 aa25.06■■□□□ 1.6
CLN3-240ENST00000631023 ZNF532Q9HCE3 1301 aa25.06■■□□□ 1.6
CLN3-240ENST00000631023 DYNLL1P63167 89 aaKnown RBP25.05■■□□□ 1.6
CLN3-240ENST00000631023 BEGAINQ9BUH8 593 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 LNPKQ9C0E8 428 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 CSADQ9Y600 493 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 MAGEB6P1A0A0J9YX57 407 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 NUCB1Q02818 461 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 REM2Q8IYK8 340 aaPredicted RBP25.05■■□□□ 1.6
CLN3-240ENST00000631023 TGFBRAP1Q8WUH2 860 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 AIDAQ96BJ3 306 aa25.05■■□□□ 1.6
CLN3-240ENST00000631023 OSBPL5Q9H0X9 879 aaPredicted RBP25.05■■□□□ 1.6
CLN3-240ENST00000631023 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.05■■□□□ 1.6
CLN3-240ENST00000631023 DDTLA6NHG4 134 aaPredicted RBP25.04■■□□□ 1.6
CLN3-240ENST00000631023 ADD2P35612 726 aa25.04■■□□□ 1.6
CLN3-240ENST00000631023 CHD1LQ86WJ1 897 aa25.04■■□□□ 1.6
CLN3-240ENST00000631023 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.04■■□□□ 1.6
CLN3-240ENST00000631023 CLMNQ96JQ2 1002 aa25.04■■□□□ 1.6
CLN3-240ENST00000631023 WRNIP1Q96S55 665 aa25.04■■□□□ 1.6
CLN3-240ENST00000631023 WBP1LQ9NX94 342 aa25.04■■□□□ 1.6
CLN3-240ENST00000631023 COL2A1P02458 1487 aaPredicted RBP25.04■■□□□ 1.6
CLN3-240ENST00000631023 ATRNL1Q5VV63 1379 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 TCRBV5S4A2TA0A5A2 114 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 HSPA1AP0DMV8 641 aaKnown RBP25.03■■□□□ 1.6
CLN3-240ENST00000631023 HSPA1BP0DMV9 641 aaKnown RBP25.03■■□□□ 1.6
CLN3-240ENST00000631023 KIF23Q02241 960 aaPredicted RBP25.03■■□□□ 1.6
CLN3-240ENST00000631023 UBE3CQ15386 1083 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 LRRFIP1Q32MZ4 808 aaKnown RBP25.03■■□□□ 1.6
CLN3-240ENST00000631023 SH3BP5LQ7L8J4 393 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 KBTBD3Q8NAB2 608 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 PI4K2BQ8TCG2 481 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 DHX36Q9H2U1 1008 aaKnown RBP25.03■■□□□ 1.6
CLN3-240ENST00000631023 STAP2Q9UGK3 403 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 SALL3Q9BXA9 1300 aa25.03■■□□□ 1.6
CLN3-240ENST00000631023 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.02■■□□□ 1.6
CLN3-240ENST00000631023 MAPKAPK5Q8IW41 473 aa25.02■■□□□ 1.6
CLN3-240ENST00000631023 USP5P45974 858 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 PDE1AP54750 535 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 SPRYD7Q5W111 196 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 ZIC5Q96T25 663 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 RIOK1Q9BRS2 568 aaKnown RBP25.01■■□□□ 1.59
CLN3-240ENST00000631023 ZBTB48P10074 688 aaPredicted RBP25.01■■□□□ 1.59
CLN3-240ENST00000631023 VGLL4Q14135 290 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 CRNKL1Q9BZJ0 848 aaKnown RBP25.01■■□□□ 1.59
CLN3-240ENST00000631023 ZNF112Q9UJU3 913 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 FLT1P17948 1338 aa25.01■■□□□ 1.59
CLN3-240ENST00000631023 TBC1D12O60347 775 aa25■■□□□ 1.59
CLN3-240ENST00000631023 MAP3K10Q02779 954 aa25■■□□□ 1.59
CLN3-240ENST00000631023 WNK4Q96J92 1243 aa25■■□□□ 1.59
CLN3-240ENST00000631023 ELP3Q9H9T3 547 aa25■■□□□ 1.59
CLN3-240ENST00000631023 PI4KBQ9UBF8 816 aa25■■□□□ 1.59
CLN3-240ENST00000631023 ZFYP08048 801 aaPredicted RBP24.99■■□□□ 1.59
CLN3-240ENST00000631023 MKRN3Q13064 507 aaKnown RBP24.99■■□□□ 1.59
CLN3-240ENST00000631023 ZKSCAN4Q969J2 545 aaPredicted RBP24.99■■□□□ 1.59
CLN3-240ENST00000631023 LAMB1P07942 1786 aa24.97■■□□□ 1.59
CLN3-240ENST00000631023 CA12O43570 354 aa24.97■■□□□ 1.59
CLN3-240ENST00000631023 CENPBP07199 599 aaPredicted RBP24.97■■□□□ 1.59
CLN3-240ENST00000631023 OPTNQ96CV9 577 aa24.97■■□□□ 1.59
CLN3-240ENST00000631023 HERC5Q9UII4 1024 aaKnown RBP24.97■■□□□ 1.59
CLN3-240ENST00000631023 HLA-DOAP06340 250 aa24.97■■□□□ 1.59
CLN3-240ENST00000631023 SREBF2Q12772 1141 aa24.97■■□□□ 1.59
CLN3-240ENST00000631023 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.97■■□□□ 1.59
CLN3-240ENST00000631023 PALD1Q9ULE6 856 aa24.97■■□□□ 1.59
CLN3-240ENST00000631023 NAV1Q8NEY1 1877 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 RNF113AO15541 343 aaKnown RBP24.96■■□□□ 1.59
CLN3-240ENST00000631023 INPP5BP32019 993 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 INHBEP58166 350 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 SLFNL1Q499Z3 407 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 ERO1BQ86YB8 467 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 FOXP4Q8IVH2 680 aaPredicted RBP24.96■■□□□ 1.59
CLN3-240ENST00000631023 FSD1Q9BTV5 496 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 SAP30BPQ9UHR5 308 aaKnown RBP24.96■■□□□ 1.59
CLN3-240ENST00000631023 SNCAIPQ9Y6H5 919 aa24.96■■□□□ 1.59
CLN3-240ENST00000631023 MANSC4A6NHS7 340 aaPredicted RBP24.95■■□□□ 1.58
CLN3-240ENST00000631023 PHF20L1A8MW92 1017 aa24.95■■□□□ 1.58
CLN3-240ENST00000631023 MBD4O95243 580 aa24.95■■□□□ 1.58
CLN3-240ENST00000631023 LCORLQ8N3X6 602 aa24.95■■□□□ 1.58
CLN3-240ENST00000631023 EVI5LQ96CN4 794 aa24.95■■□□□ 1.58
CLN3-240ENST00000631023 ARMT1Q9H993 441 aa24.95■■□□□ 1.58
CLN3-240ENST00000631023 BAZ2AQ9UIF9 1905 aaKnown RBP24.95■■□□□ 1.58
CLN3-240ENST00000631023 SPDYE5A6NIY4 337 aa24.94■■□□□ 1.58
CLN3-240ENST00000631023 TM4SF4P48230 202 aa24.94■■□□□ 1.58
CLN3-240ENST00000631023 PLEKHM2Q8IWE5 1019 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms