RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 STRCQ7RTU9 1775 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 FAM237AA0A1B0GTK4 181 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 TRIM66O15016 1216 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 ARHGAP6O43182 974 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 CUTAO60888 179 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 TPM1P09493 284 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 RXRAP19793 462 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 IFIT5Q13325 482 aaKnown RBP9.97□□□□□ -0.81
VCL-207ENST00000624354 TRIM65Q6PJ69 517 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 PI16Q6UXB8 463 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 GOLGA6L1Q8N7Z2 621 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 CCDC85AQ96PX6 553 aaPredicted RBP9.97□□□□□ -0.81
VCL-207ENST00000624354 FANCLQ9NW38 375 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 HOOK1Q9UJC3 728 aaKnown RBP9.97□□□□□ -0.81
VCL-207ENST00000624354 SH2B2O14492 632 aaPredicted RBP9.97□□□□□ -0.81
VCL-207ENST00000624354 IARSP41252 1262 aaKnown RBP9.97□□□□□ -0.81
VCL-207ENST00000624354 ICE2Q659A1 982 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 APOA5Q6Q788 366 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 NFXL1Q6ZNB6 911 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 MICU3Q86XE3 530 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 PHKBQ93100 1093 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 CLIC6Q96NY7 704 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.97□□□□□ -0.81
VCL-207ENST00000624354 KCNH3Q9ULD8 1083 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 PCDHA5Q9Y5H7 936 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 KIF1AQ12756 1690 aa9.97□□□□□ -0.81
VCL-207ENST00000624354 ZBTB43O43298 467 aa9.96□□□□□ -0.81
VCL-207ENST00000624354 SLC9C2Q5TAH2 1124 aa9.96□□□□□ -0.81
VCL-207ENST00000624354 REXO1L1PQ8IX06 675 aa9.96□□□□□ -0.81
VCL-207ENST00000624354 TMEM87BQ96K49 555 aa9.96□□□□□ -0.81
VCL-207ENST00000624354 MAP3K14Q99558 947 aa9.96□□□□□ -0.81
VCL-207ENST00000624354 ISCA1Q9BUE6 129 aa9.96□□□□□ -0.81
VCL-207ENST00000624354 GOLGA6L9A6NEM1 432 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 EFCAB8A8MWE9 144 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 ADD2P35612 726 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 TCIRG1Q13488 830 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 LONRF3Q496Y0 759 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 CYB5R4Q7L1T6 521 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 METTL16Q86W50 562 aaKnown RBP9.96□□□□□ -0.82
VCL-207ENST00000624354 SMARCE1Q969G3 411 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 MPHOSPH8Q99549 860 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 CARD6Q9BX69 1037 aa9.96□□□□□ -0.82
VCL-207ENST00000624354 ZNF330Q9Y3S2 320 aaPredicted RBP9.96□□□□□ -0.82
VCL-207ENST00000624354 LOC102724159A0A0B4J2E5 919 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 GOLGA8AA7E2F4 631 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 ERVV-2B6SEH9 535 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 TMEM232C9JQI7 657 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 CDC27P30260 824 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 ST5P78524 1137 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 PWP2Q15269 919 aaKnown RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 TTF1Q15361 905 aaPredicted RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 METTL24Q5JXM2 366 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 TBC1D10CQ8IV04 446 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 DENND2AQ9ULE3 1009 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 STRCP1A6NGW2 1772 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 PCDH11XQ9BZA7 1347 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 PCDH11YQ9BZA8 1340 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 TADA3O75528 432 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 GYS2P54840 703 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 FAM177A1Q8N128 213 aaPredicted RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 KRI1Q8N9T8 703 aaKnown RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 BAG1Q99933 345 aaPredicted RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.95□□□□□ -0.82
VCL-207ENST00000624354 NBPF3Q9H094 633 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 LCMT1Q9UIC8 334 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 PPP2R2CQ9Y2T4 447 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 B4E1Z4 1266 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 IDH1O75874 414 aaKnown RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 ZRANB2O95218 330 aaKnown RBP eCLIP9.95□□□□□ -0.821e-6■■■■■ 30
VCL-207ENST00000624354 MCAMP43121 646 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 MMP14P50281 582 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 GOLGA8FQ08AF8 430 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 GOLGA8DPQ0D2H9 430 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 FOXP4Q8IVH2 680 aaPredicted RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 PDILTQ8N807 584 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 ZCRB1Q8TBF4 217 aaKnown RBP9.95□□□□□ -0.82
VCL-207ENST00000624354 FAM89AQ96GI7 184 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 AK7Q96M32 723 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 BTG4Q9NY30 223 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 DACH1Q9UI36 760 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 PARP3Q9Y6F1 533 aa9.95□□□□□ -0.82
VCL-207ENST00000624354 PCCAP05165 728 aaPredicted RBP9.94□□□□□ -0.82
VCL-207ENST00000624354 SAFBQ15424 915 aaKnown RBP eCLIP9.94□□□□□ -0.82
VCL-207ENST00000624354 TMEM67Q5HYA8 995 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 LDHAL6AQ6ZMR3 332 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 ELOA2Q8IYF1 753 aaPredicted RBP9.94□□□□□ -0.82
VCL-207ENST00000624354 VWA3AA6NCI4 1184 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 STX10O60499 249 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 GNG11P61952 73 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 SSRP1Q08945 709 aaKnown RBP9.94□□□□□ -0.82
VCL-207ENST00000624354 TRIM28Q13263 835 aaKnown RBP9.94□□□□□ -0.82
VCL-207ENST00000624354 UBE3CQ15386 1083 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 PTPN21Q16825 1174 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 NOM1Q5C9Z4 860 aaKnown RBP9.94□□□□□ -0.82
VCL-207ENST00000624354 WASF1Q92558 559 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 MYCBPQ99417 103 aaPredicted RBP9.94□□□□□ -0.82
VCL-207ENST00000624354 BRMS1Q9HCU9 246 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 TBC1D2BQ9UPU7 963 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 LAMB4A4D0S4 1761 aa9.94□□□□□ -0.82
VCL-207ENST00000624354 NWD2Q9ULI1 1742 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms