RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 DHX32Q7L7V1 743 aaKnown RBP12.38□□□□□ -0.43
UPF3A-212ENST00000619079 BRAPQ7Z569 592 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 CCDC125Q86Z20 511 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 SIL1Q9H173 461 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 HSD3B7Q9H2F3 369 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 FAN1Q9Y2M0 1017 aa12.38□□□□□ -0.43
UPF3A-212ENST00000619079 CTDNEP1O95476 244 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 CMA1P23946 247 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 USP8P40818 1118 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 OLFM4Q6UX06 510 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 DEFB132Q7Z7B7 95 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 TADA2BQ86TJ2 420 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 SMARCC1Q92922 1105 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-212ENST00000619079 SECISBP2LQ93073 1101 aaKnown RBP12.37□□□□□ -0.43
UPF3A-212ENST00000619079 C9orf78Q9NZ63 289 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-212ENST00000619079 TUBE1Q9UJT0 475 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 PALLDQ8WX93 1383 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 NHSQ6T4R5 1651 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 CCDC175P0C221 793 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 PSEN1P49768 467 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 EN1Q05925 392 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-212ENST00000619079 TBX2Q13207 712 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-212ENST00000619079 EAF2Q96CJ1 260 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-212ENST00000619079 BOLA2Q9H3K6 86 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 ANKZF1Q9H8Y5 726 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 CDC23Q9UJX2 597 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 AKAP2Q9Y2D5 859 aa12.37□□□□□ -0.43
UPF3A-212ENST00000619079 CARMIL3Q8ND23 1372 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 SCN11AQ9UI33 1791 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 ZNF790Q6PG37 636 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 LRRC31Q6UY01 552 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 CNNM3Q8NE01 707 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 CTCFLQ8NI51 663 aaPredicted RBP12.36□□□□□ -0.43
UPF3A-212ENST00000619079 CCDC102AQ96A19 550 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 ZNF274Q96GC6 653 aaPredicted RBP12.36□□□□□ -0.43
UPF3A-212ENST00000619079 AGXT2Q9BYV1 514 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 TOMM22Q9NS69 142 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 KIF5CO60282 957 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 WDHD1O75717 1129 aaPredicted RBP12.36□□□□□ -0.43
UPF3A-212ENST00000619079 FOSBP53539 338 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 SPECC1LQ69YQ0 1117 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 DPF2Q92785 391 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 VIPAS39Q9H9C1 493 aa12.36□□□□□ -0.43
UPF3A-212ENST00000619079 MRC1P22897 1456 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 CYP21A2P08686 494 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 CASP8Q14790 479 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 RPAINQ86UA6 219 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 PA2G4Q9UQ80 394 aaKnown RBP12.35□□□□□ -0.43
UPF3A-212ENST00000619079 SBF2Q86WG5 1849 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 SASH1O94885 1247 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 PFKFB1P16118 471 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 GSCP56915 257 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-212ENST00000619079 FOXR1Q6PIV2 292 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 SYNE3Q6ZMZ3 975 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 TOGARAM2Q6ZUX3 1019 aa12.35□□□□□ -0.43
UPF3A-212ENST00000619079 NAA15Q9BXJ9 866 aaKnown RBP12.35□□□□□ -0.43
UPF3A-212ENST00000619079 CCDC8Q9H0W5 538 aaPredicted RBP12.35□□□□□ -0.43
UPF3A-212ENST00000619079 KCNQ3O43525 872 aa12.34□□□□□ -0.43
UPF3A-212ENST00000619079 KCNQ4P56696 695 aa12.34□□□□□ -0.43
UPF3A-212ENST00000619079 TC2NQ8N9U0 490 aa12.34□□□□□ -0.43
UPF3A-212ENST00000619079 ABCB6Q9NP58 842 aa12.34□□□□□ -0.43
UPF3A-212ENST00000619079 CHPF2Q9P2E5 772 aa12.34□□□□□ -0.43
UPF3A-212ENST00000619079 CCNL1Q9UK58 526 aaPredicted RBP12.34□□□□□ -0.43
UPF3A-212ENST00000619079 ITGB4P16144 1822 aa12.34□□□□□ -0.43
UPF3A-212ENST00000619079 LOC102724428A0A0B4J2F2 783 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 PLSCR1O15162 318 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 MCM3P25205 808 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 ATP6V1AP38606 617 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 SYKP43405 635 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 SIK1P57059 783 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 EZH2Q15910 746 aaKnown RBP12.33□□□□□ -0.43
UPF3A-212ENST00000619079 MCMDC2Q4G0Z9 681 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 PDILTQ8N807 584 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 JMYQ8N9B5 988 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 AFAP1L1Q8TED9 768 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 FAM204AQ9H8W3 233 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 CLIC4Q9Y696 253 aa12.33□□□□□ -0.43
UPF3A-212ENST00000619079 BTAF1O14981 1849 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 ADAMTS7Q9UKP4 1686 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 TMEM232C9JQI7 657 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 KIF1CO43896 1103 aaKnown RBP12.33□□□□□ -0.44
UPF3A-212ENST00000619079 N4BP1O75113 896 aaKnown RBP12.33□□□□□ -0.44
UPF3A-212ENST00000619079 APPP05067 770 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 CCDC172P0C7W6 258 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 EIF2S2P20042 333 aaKnown RBP12.33□□□□□ -0.44
UPF3A-212ENST00000619079 AARSP49588 968 aaKnown RBP eCLIP12.33□□□□□ -0.44
UPF3A-212ENST00000619079 GUCY1B3Q02153 619 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 TXNRD1Q16881 649 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 WHAMMP3Q1A5X7 153 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 MYSM1Q5VVJ2 828 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 GPATCH11Q8N954 259 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 PANX2Q96RD6 677 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 PNKPQ96T60 521 aa12.33□□□□□ -0.44
UPF3A-212ENST00000619079 BICC1Q9H694 974 aaKnown RBP12.33□□□□□ -0.44
UPF3A-212ENST00000619079 CCDC196A0A1B0GTZ2 297 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ATP5JP18859 108 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 TICAM2Q86XR7 235 aa12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ZNF622Q969S3 477 aaKnown RBP eCLIP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 ZNF496Q96IT1 587 aaPredicted RBP12.32□□□□□ -0.44
UPF3A-212ENST00000619079 C8orf76Q96K31 380 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms