RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FERMT2Q96AC1 680 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 PRPHP41219 470 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 CTDSPL2Q05D32 466 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TTC38Q5R3I4 469 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TEX11Q8IYF3 940 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 RASEFQ8IZ41 740 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TCHPQ9BT92 498 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 DSCC1Q9BVC3 393 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 GRIPAP1Q4V328 841 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TRMT44Q8IYL2 757 aaKnown RBP15.76■□□□□ 0.11
CPSF1-212ENST00000616140 XPO4Q9C0E2 1151 aaKnown RBP15.76■□□□□ 0.11
CPSF1-212ENST00000616140 DNAI2Q9GZS0 605 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 HOMER2Q9NSB8 354 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 A0A1W2PRG0 241 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 RAPGEF1Q13905 1077 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TICAM2Q86XR7 235 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 UNC5CLQ8IV45 518 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 SYNRGQ9UMZ2 1314 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 RIMBP2O15034 1052 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 HIBADHP31937 336 aaKnown RBP15.75■□□□□ 0.11
CPSF1-212ENST00000616140 PARP10Q53GL7 1025 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 BEND3Q5T5X7 828 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 ZSWIM6Q9HCJ5 1215 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 IMPACTQ9P2X3 320 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 SAP30BPQ9UHR5 308 aaKnown RBP15.75■□□□□ 0.11
CPSF1-212ENST00000616140 IKBKGQ9Y6K9 419 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 LRMPQ12912 555 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 DCAF17Q5H9S7 520 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-212ENST00000616140 HDXQ7Z353 690 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 C8orf37Q96NL8 207 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 MRPL12P52815 198 aaKnown RBP15.75■□□□□ 0.11
CPSF1-212ENST00000616140 SSH2Q76I76 1423 aa15.75■□□□□ 0.11
CPSF1-212ENST00000616140 IBTKQ9P2D0 1353 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-212ENST00000616140 GJC1P36383 396 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 POSTNQ15063 836 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 NAPGQ99747 312 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-212ENST00000616140 RASAL2Q9UJF2 1139 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 TERF1P54274 439 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 CFAP58Q5T655 872 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 KIAA1468Q9P260 1216 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 ARHGEF10O15013 1369 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 MTX1Q13505 466 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 ADALQ6DHV7 355 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 ARFGAP2Q8N6H7 521 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 PAIP2Q9BPZ3 127 aaKnown RBP15.74■□□□□ 0.11
CPSF1-212ENST00000616140 TTF2Q9UNY4 1162 aaKnown RBP15.74■□□□□ 0.11
CPSF1-212ENST00000616140 TMEM110-MUSTN1A8MSY1 372 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 ADD1P35611 737 aaKnown RBP15.74■□□□□ 0.11
CPSF1-212ENST00000616140 TXKP42681 527 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 PAK1Q13153 545 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 CCDC65Q8IXS2 484 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 SYNCQ9H7C4 482 aa15.74■□□□□ 0.11
CPSF1-212ENST00000616140 SMIM23A6NLE4 172 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 PLS1Q14651 629 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 NBPF11Q86T75 865 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 TAB2Q9NYJ8 693 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 ERCC3P19447 782 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 EIF6P56537 245 aaKnown RBP15.73■□□□□ 0.11
CPSF1-212ENST00000616140 PLCB3Q01970 1234 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 CCDC77Q9BR77 488 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 GPCPD1Q9NPB8 672 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 AATFQ9NY61 560 aaKnown RBP eCLIP15.73■□□□□ 0.114e-12■■■■■ 31.9
CPSF1-212ENST00000616140 GNPATO15228 680 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 TNNC1P63316 161 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 ADCK5Q3MIX3 580 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 VPS54Q9P1Q0 977 aa15.73■□□□□ 0.11
CPSF1-212ENST00000616140 RPL13P26373 211 aaKnown RBP15.72■□□□□ 0.11
CPSF1-212ENST00000616140 MICALL1Q8N3F8 863 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 SPATA5Q8NB90 893 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 PPP1R2P41236 205 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 TRIM14Q14142 442 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 CYP26C1Q6V0L0 522 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 GPATCH11Q8N954 259 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 FBF1Q8TES7 1133 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 VEZTQ9HBM0 779 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 LONRF3Q496Y0 759 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 AKNAD1Q5T1N1 836 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 HSPD1P10809 573 aaKnown RBP15.72■□□□□ 0.11
CPSF1-212ENST00000616140 EEF2P13639 858 aaKnown RBP15.72■□□□□ 0.11
CPSF1-212ENST00000616140 GPIHBP1Q8IV16 184 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 OTUD6BQ8N6M0 293 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 ZNF274Q96GC6 653 aaPredicted RBP15.72■□□□□ 0.11
CPSF1-212ENST00000616140 STAP2Q9UGK3 403 aa15.72■□□□□ 0.11
CPSF1-212ENST00000616140 PFKFB1P16118 471 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 TMTC1Q8IUR5 882 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 IMPG2Q9BZV3 1241 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 ZBTB21Q9ULJ3 1066 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 ATP6V0A2Q9Y487 856 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 RNASE9P60153 205 aaKnown RBP15.71■□□□□ 0.11
CPSF1-212ENST00000616140 PNOCQ13519 176 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 CCDC25Q86WR0 208 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 FAM76AQ8TAV0 307 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 BCL2L12Q9HB09 334 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 TFCP2L1Q9NZI6 479 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 TCIRG1Q13488 830 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 PPP2R5BQ15173 497 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 CNNM4Q6P4Q7 775 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 CPLX4Q7Z7G2 160 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 HDAC9Q9UKV0 1011 aa15.71■□□□□ 0.11
CPSF1-212ENST00000616140 ZNF500O60304 480 aaPredicted RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms