RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 CFDP1Q9UEE9 299 aaPredicted RBP6.94□□□□□ -1.3
VRK3-222ENST00000601324 SOX13Q9UN79 622 aa6.94□□□□□ -1.3
VRK3-222ENST00000601324 TIAM1Q13009 1591 aa6.94□□□□□ -1.3
VRK3-222ENST00000601324 NWD1Q149M9 1564 aa6.94□□□□□ -1.3
VRK3-222ENST00000601324 MROH1Q8NDA8 1641 aa6.94□□□□□ -1.3
VRK3-222ENST00000601324 NID1P14543 1247 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 RXRBP28702 533 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 CDC27P30260 824 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 BAG6P46379 1132 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 COL9A3Q14050 684 aaPredicted RBP6.93□□□□□ -1.3
VRK3-222ENST00000601324 DTHD1Q6ZMT9 781 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 IL22RA1Q8N6P7 574 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 MUC3BQ9H195 1237 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 ZNF576Q9H609 170 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 ZFYVE1Q9HBF4 777 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 DIP2AQ14689 1571 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 PHLPP1O60346 1717 aa6.93□□□□□ -1.3
VRK3-222ENST00000601324 AHDC1Q5TGY3 1603 aaPredicted RBP6.92□□□□□ -1.3
VRK3-222ENST00000601324 CTSHP09668 335 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 CABP4P57796 275 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 RPS26P11Q5JNZ5 115 aaPredicted RBP6.92□□□□□ -1.3
VRK3-222ENST00000601324 MSL1Q68DK7 614 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 VN1R5Q7Z5H4 357 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 WFDC8Q8IUA0 241 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 SH2B1Q9NRF2 756 aaPredicted RBP6.92□□□□□ -1.3
VRK3-222ENST00000601324 PPM1HQ9ULR3 514 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 TMEM2Q9UHN6 1383 aa6.92□□□□□ -1.3
VRK3-222ENST00000601324 NKTRP30414 1462 aaKnown RBP6.92□□□□□ -1.3
VRK3-222ENST00000601324 SHPRHQ149N8 1683 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 E9PSI1 815 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 H3BRJ5 948 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 RECKO95980 971 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 EPHA1P21709 976 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 SNRPNP63162 240 aaKnown RBP6.91□□□□□ -1.3
VRK3-222ENST00000601324 LINC00114Q6XXX2 140 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 ANKRD24Q8TF21 1146 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 CLEC4MQ9H2X3 399 aaPredicted RBP6.91□□□□□ -1.3
VRK3-222ENST00000601324 PPME1Q9Y570 386 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 CCNB3Q8WWL7 1395 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 ARHGAP31Q2M1Z3 1444 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 FYCO1Q9BQS8 1478 aa6.91□□□□□ -1.3
VRK3-222ENST00000601324 PIK3R2O00459 728 aa6.9□□□□□ -1.3
VRK3-222ENST00000601324 GNB5O14775 395 aa6.9□□□□□ -1.3
VRK3-222ENST00000601324 PCDH1Q08174 1060 aa6.9□□□□□ -1.3
VRK3-222ENST00000601324 NPM2Q86SE8 214 aaKnown RBP6.9□□□□□ -1.3
VRK3-222ENST00000601324 MKL2Q9ULH7 1088 aa6.9□□□□□ -1.3
VRK3-222ENST00000601324 AKAP2Q9Y2D5 859 aa6.9□□□□□ -1.3
VRK3-222ENST00000601324 ST13P50502 369 aaKnown RBP6.89□□□□□ -1.31
VRK3-222ENST00000601324 IKBKEQ14164 716 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 TSNAXIP1Q2TAA8 658 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 LDLRAD1Q5T700 205 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 FAM117BQ6P1L5 589 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 PODNQ7Z5L7 613 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 DMRTC2Q8IXT2 367 aaPredicted RBP6.89□□□□□ -1.31
VRK3-222ENST00000601324 TRIM11Q96F44 468 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 BACH2Q9BYV9 841 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 ADAMTS8Q9UP79 889 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 CCDC141Q6ZP82 1450 aa6.89□□□□□ -1.31
VRK3-222ENST00000601324 KDM5AP29375 1690 aaKnown RBP6.88□□□□□ -1.31
VRK3-222ENST00000601324 MAST1Q9Y2H9 1570 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 NCOA3Q9Y6Q9 1424 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 MSH6P52701 1360 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 USP31Q70CQ4 1352 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 AFF2P51816 1311 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 LINC01387J3KSC0 135 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 ESRRAP11474 423 aaPredicted RBP6.88□□□□□ -1.31
VRK3-222ENST00000601324 TAF1CQ15572 869 aaPredicted RBP6.88□□□□□ -1.31
VRK3-222ENST00000601324 TRAPPC3LQ5T215 181 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 MEI1Q5TIA1 1274 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 MAP4K3Q8IVH8 894 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 DTWD1Q8N5C7 304 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 WNT8BQ93098 351 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 CEP44Q9C0F1 390 aa6.88□□□□□ -1.31
VRK3-222ENST00000601324 SRA1Q9HD15 236 aaKnown RBP6.88□□□□□ -1.31
VRK3-222ENST00000601324 TTF2Q9UNY4 1162 aaKnown RBP6.88□□□□□ -1.31
VRK3-222ENST00000601324 SETD5Q9C0A6 1442 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 SPDYE3A6NKU9 549 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 B3GALT4O96024 378 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 CDC25BP30305 580 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 RBM6P78332 1123 aaKnown RBP6.87□□□□□ -1.31
VRK3-222ENST00000601324 FAAP100Q0VG06 881 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 ZNF423Q2M1K9 1284 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 TXNDC11Q6PKC3 985 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 BEND7Q8N7W2 519 aaPredicted RBP6.87□□□□□ -1.31
VRK3-222ENST00000601324 TMEM87AQ8NBN3 555 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 SLC26A8Q96RN1 970 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 SOX17Q9H6I2 414 aaPredicted RBP6.87□□□□□ -1.31
VRK3-222ENST00000601324 SEC31BQ9NQW1 1179 aa6.87□□□□□ -1.31
VRK3-222ENST00000601324 CEP162Q5TB80 1403 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 SOX1O00570 391 aaPredicted RBP6.86□□□□□ -1.31
VRK3-222ENST00000601324 SCAMP3O14828 347 aaKnown RBP6.86□□□□□ -1.31
VRK3-222ENST00000601324 FSCN2O14926 492 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 SETDB1Q15047 1291 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 TPTE2Q6XPS3 522 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 PLVAPQ9BX97 442 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 OSGEPQ9NPF4 335 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 TMEM39AQ9NV64 488 aa6.86□□□□□ -1.31
VRK3-222ENST00000601324 NOP53Q9NZM5 478 aaKnown RBP6.86□□□□□ -1.31
VRK3-222ENST00000601324 GPN3Q9UHW5 284 aaPredicted RBP6.86□□□□□ -1.31
VRK3-222ENST00000601324 PIK3C2BO00750 1634 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms