RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ENTPD3O75355 529 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 HNRNPUQ00839 825 aaKnown RBP eCLIP21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 MTX1Q13505 466 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 ZKSCAN2Q63HK3 967 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 GADL1Q6ZQY3 521 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 ANKRD23Q86SG2 305 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 SPATA5Q8NB90 893 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 IDI2Q9BXS1 227 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 ZCCHC17Q9NP64 241 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 DDX4Q9NQI0 724 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 GAKO14976 1311 aa21.69■■□□□ 1.06
SHKBP1-223ENST00000600552 FMNL1O95466 1100 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-223ENST00000600552 NOL9Q5SY16 702 aaKnown RBP21.68■■□□□ 1.06
SHKBP1-223ENST00000600552 C1orf115Q9H7X2 142 aa21.68■■□□□ 1.06
SHKBP1-223ENST00000600552 KCNH4Q9UQ05 1017 aa21.68■■□□□ 1.06
SHKBP1-223ENST00000600552 MROH7-TTC4A0A0A0MT08 1334 aa21.68■■□□□ 1.06
SHKBP1-223ENST00000600552 PSMC4P43686 418 aa21.67■■□□□ 1.06
SHKBP1-223ENST00000600552 C17orf99Q6UX52 265 aa21.67■■□□□ 1.06
SHKBP1-223ENST00000600552 SCYL3Q8IZE3 742 aa21.67■■□□□ 1.06
SHKBP1-223ENST00000600552 ZNF333Q96JL9 665 aa21.67■■□□□ 1.06
SHKBP1-223ENST00000600552 SNRKQ9NRH2 765 aa21.67■■□□□ 1.06
SHKBP1-223ENST00000600552 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-223ENST00000600552 DOCK2Q92608 1830 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 FAM196BA6NMK8 535 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 PHF20L1A8MW92 1017 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 LDHCP07864 332 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 CYP2C8P10632 490 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 GSTO1P78417 241 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 CCDC84Q86UT8 332 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 LRP2BPQ9P2M1 347 aa21.66■■□□□ 1.06
SHKBP1-223ENST00000600552 PDS5AQ29RF7 1337 aaKnown RBP21.65■■□□□ 1.06
SHKBP1-223ENST00000600552 CXCL11O14625 94 aa21.65■■□□□ 1.06
SHKBP1-223ENST00000600552 MOGSQ13724 837 aa21.65■■□□□ 1.06
SHKBP1-223ENST00000600552 MIER1Q8N108 512 aa21.65■■□□□ 1.06
SHKBP1-223ENST00000600552 FAM163AQ96GL9 167 aaPredicted RBP21.65■■□□□ 1.06
SHKBP1-223ENST00000600552 GPR75-ASB3A0A0A6YYF3 556 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 TRIM75PA6NK02 468 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 PTPRAP18433 802 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 CTGFP29279 349 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 TTC39AQ5SRH9 613 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 GPAT2Q6NUI2 795 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 FTSJ3Q8IY81 847 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 ZNF384Q8TF68 577 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 TRIM47Q96LD4 638 aa21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 PARK7Q99497 189 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-223ENST00000600552 SURF6O75683 361 aaKnown RBP21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 UQCRFS1P1P0C7P4 283 aa21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 MCAMP43121 646 aa21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 ITPRIPQ8IWB1 547 aa21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 RAET1EQ8TD07 263 aa21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 NSUN4Q96CB9 384 aaKnown RBP21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 NOL10Q9BSC4 688 aaKnown RBP21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 HTTP42858 3142 aa21.63■■□□□ 1.05
SHKBP1-223ENST00000600552 ATRNL1Q5VV63 1379 aa21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 OSBPP22059 807 aa21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 ARID4AP29374 1257 aaPredicted RBP21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 RHBDL3P58872 404 aa21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 FASTKD5Q7L8L6 764 aaKnown RBP21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 TEX11Q8IYF3 940 aa21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 BIN2Q9UBW5 565 aaPredicted RBP21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 AFG3L2Q9Y4W6 797 aa21.62■■□□□ 1.05
SHKBP1-223ENST00000600552 CTNND1O60716 968 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-223ENST00000600552 GNRH1P01148 92 aa21.61■■□□□ 1.05
SHKBP1-223ENST00000600552 HOXD10P28358 340 aa21.61■■□□□ 1.05
SHKBP1-223ENST00000600552 DBNDD2Q9BQY9 259 aa21.61■■□□□ 1.05
SHKBP1-223ENST00000600552 SRRDQ9UH36 339 aa21.61■■□□□ 1.05
SHKBP1-223ENST00000600552 RFX7Q2KHR2 1363 aa21.61■■□□□ 1.05
SHKBP1-223ENST00000600552 MYPNQ86TC9 1320 aa21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 A0A0G2JLL6 359 aaPredicted RBP21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 ZBTB22O15209 634 aa21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 ATP8B2P98198 1209 aa21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 CCDC158Q5M9N0 1113 aa21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 PRRT2Q7Z6L0 340 aaPredicted RBP21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 SH3RF3Q8TEJ3 882 aaPredicted RBP21.6■■□□□ 1.05
SHKBP1-223ENST00000600552 ADGRA2Q96PE1 1338 aa21.59■■□□□ 1.05
SHKBP1-223ENST00000600552 PRMT2P55345 433 aa21.59■■□□□ 1.05
SHKBP1-223ENST00000600552 MTFR1Q15390 333 aa21.59■■□□□ 1.05
SHKBP1-223ENST00000600552 TNNI3KQ59H18 835 aa21.59■■□□□ 1.05
SHKBP1-223ENST00000600552 NAA16Q6N069 864 aaPredicted RBP21.59■■□□□ 1.05
SHKBP1-223ENST00000600552 FPGT-TNNI3KV9GXZ4 949 aa21.59■■□□□ 1.05
SHKBP1-223ENST00000600552 FCGRTP55899 365 aa21.58■■□□□ 1.05
SHKBP1-223ENST00000600552 MAP3K10Q02779 954 aa21.58■■□□□ 1.05
SHKBP1-223ENST00000600552 POLA2Q14181 598 aa21.58■■□□□ 1.05
SHKBP1-223ENST00000600552 SMCR8Q8TEV9 937 aaPredicted RBP21.58■■□□□ 1.05
SHKBP1-223ENST00000600552 OSBPL5Q9H0X9 879 aaPredicted RBP21.58■■□□□ 1.05
SHKBP1-223ENST00000600552 AATFQ9NY61 560 aaKnown RBP eCLIP21.58■■□□□ 1.05
SHKBP1-223ENST00000600552 CENPFP49454 3210 aa21.58■■□□□ 1.04
SHKBP1-223ENST00000600552 RBBP6Q7Z6E9 1792 aaKnown RBP21.58■■□□□ 1.04
SHKBP1-223ENST00000600552 GRK4P32298 578 aa21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 PRKCZQ05513 592 aa21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 DIEXFQ68CQ4 756 aaKnown RBP21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 SSH3Q8TE77 659 aa21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 CCDC8Q9H0W5 538 aaPredicted RBP21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 BCL11AQ9H165 835 aa21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 TAOK2Q9UL54 1235 aa21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 DOCK1Q14185 1865 aa21.57■■□□□ 1.04
SHKBP1-223ENST00000600552 BCRP11274 1271 aa21.56■■□□□ 1.04
SHKBP1-223ENST00000600552 RLBP1P12271 317 aa21.56■■□□□ 1.04
SHKBP1-223ENST00000600552 SPP2Q13103 211 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms