RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GPATCH3Q96I76 525 aa23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 ZIC5Q96T25 663 aa23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 ANGEL1Q9UNK9 670 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-221ENST00000599833 GLRX3O76003 335 aaKnown RBP23.67■■□□□ 1.38
SHKBP1-221ENST00000599833 SLC10A3P09131 477 aa23.67■■□□□ 1.38
SHKBP1-221ENST00000599833 SLURP2P0DP57 97 aa23.67■■□□□ 1.38
SHKBP1-221ENST00000599833 MIGA1Q8NAN2 632 aa23.67■■□□□ 1.38
SHKBP1-221ENST00000599833 AOC2O75106 756 aa23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 PDE4AP27815 886 aa23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 MAP3K10Q02779 954 aa23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 PICALMQ13492 652 aa23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 TEX11Q8IYF3 940 aa23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 KBTBD3Q8NAB2 608 aa23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 OSBPL5Q9H0X9 879 aaPredicted RBP23.66■■□□□ 1.38
SHKBP1-221ENST00000599833 MYH1P12882 1939 aa23.65■■□□□ 1.38
SHKBP1-221ENST00000599833 BAG3O95817 575 aa23.65■■□□□ 1.38
SHKBP1-221ENST00000599833 ARMC9Q7Z3E5 817 aa23.65■■□□□ 1.38
SHKBP1-221ENST00000599833 PLEKHM2Q8IWE5 1019 aa23.65■■□□□ 1.38
SHKBP1-221ENST00000599833 CLMNQ96JQ2 1002 aa23.65■■□□□ 1.38
SHKBP1-221ENST00000599833 NAV1Q8NEY1 1877 aa23.64■■□□□ 1.38
SHKBP1-221ENST00000599833 FLT1P17948 1338 aa23.64■■□□□ 1.38
SHKBP1-221ENST00000599833 UBE3CQ15386 1083 aa23.64■■□□□ 1.37
SHKBP1-221ENST00000599833 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.64■■□□□ 1.37
SHKBP1-221ENST00000599833 OSBPL3Q9H4L5 887 aa23.64■■□□□ 1.37
SHKBP1-221ENST00000599833 ZNF112Q9UJU3 913 aa23.64■■□□□ 1.37
SHKBP1-221ENST00000599833 ERC2O15083 957 aa23.63■■□□□ 1.37
SHKBP1-221ENST00000599833 PPP1R12BO60237 982 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-221ENST00000599833 ECE1P42892 770 aa23.63■■□□□ 1.37
SHKBP1-221ENST00000599833 ZNF157P51786 506 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-221ENST00000599833 TTLL12Q14166 644 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-221ENST00000599833 TGFBRAP1Q8WUH2 860 aa23.63■■□□□ 1.37
SHKBP1-221ENST00000599833 UNCXA6NJT0 531 aa23.62■■□□□ 1.37
SHKBP1-221ENST00000599833 PLCG2P16885 1265 aa23.62■■□□□ 1.37
SHKBP1-221ENST00000599833 MIGA2Q7L4E1 593 aa23.62■■□□□ 1.37
SHKBP1-221ENST00000599833 LCORLQ8N3X6 602 aa23.62■■□□□ 1.37
SHKBP1-221ENST00000599833 PHF20L1A8MW92 1017 aa23.61■■□□□ 1.37
SHKBP1-221ENST00000599833 GJA5P36382 358 aa23.61■■□□□ 1.37
SHKBP1-221ENST00000599833 MAPKAPK5Q8IW41 473 aa23.61■■□□□ 1.37
SHKBP1-221ENST00000599833 CSRNP1Q96S65 589 aa23.61■■□□□ 1.37
SHKBP1-221ENST00000599833 MAGEB6P1A0A0J9YX57 407 aa23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 IREB2P48200 963 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 VGLL4Q14135 290 aa23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 PAXIP1Q6ZW49 1069 aaPredicted RBP23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 METTL16Q86W50 562 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 CERS3Q8IU89 383 aa23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 CCDC102AQ96A19 550 aa23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 NOL10Q9BSC4 688 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 PUS7LQ9H0K6 701 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-221ENST00000599833 PHIPQ8WWQ0 1821 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 BAZ2AQ9UIF9 1905 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 MAP2K2P36507 400 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 NOGQ13253 232 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 GRM1Q13255 1194 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 ANKRD13AQ8IZ07 590 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 OSBP2Q969R2 916 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 ARMT1Q9H993 441 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 SNCAIPQ9Y6H5 919 aa23.59■■□□□ 1.37
SHKBP1-221ENST00000599833 TBC1D12O60347 775 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 INPP5BP32019 993 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 MAP3K9P80192 1104 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 SPRYD7Q5W111 196 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 DCAF15Q66K64 600 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 HOOK2Q96ED9 719 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 ZNF341Q9BYN7 854 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 DNAJC18Q9H819 358 aa23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 ZBTB47Q9UFB7 747 aaPredicted RBP23.58■■□□□ 1.37
SHKBP1-221ENST00000599833 DOCK1Q14185 1865 aa23.58■■□□□ 1.36
SHKBP1-221ENST00000599833 RNF113AO15541 343 aaKnown RBP23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 PRKAB2O43741 272 aa23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 MBD4O95243 580 aa23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 RRP1BQ14684 758 aaKnown RBP23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 CNKSR2Q8WXI2 1034 aa23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 ZKSCAN4Q969J2 545 aaPredicted RBP23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 WNK4Q96J92 1243 aa23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 WRNIP1Q96S55 665 aa23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 WBP1LQ9NX94 342 aa23.57■■□□□ 1.36
SHKBP1-221ENST00000599833 ATAD5Q96QE3 1844 aa23.56■■□□□ 1.36
SHKBP1-221ENST00000599833 FAM196BA6NMK8 535 aa23.56■■□□□ 1.36
SHKBP1-221ENST00000599833 KIF23Q02241 960 aaPredicted RBP23.56■■□□□ 1.36
SHKBP1-221ENST00000599833 EVX2Q03828 476 aa23.56■■□□□ 1.36
SHKBP1-221ENST00000599833 ZSCAN25Q6NSZ9 544 aa23.56■■□□□ 1.36
SHKBP1-221ENST00000599833 PALD1Q9ULE6 856 aa23.56■■□□□ 1.36
SHKBP1-221ENST00000599833 NOL9Q5SY16 702 aaKnown RBP23.55■■□□□ 1.36
SHKBP1-221ENST00000599833 SDR42E1Q8WUS8 393 aa23.55■■□□□ 1.36
SHKBP1-221ENST00000599833 APPBP2Q92624 585 aa23.55■■□□□ 1.36
SHKBP1-221ENST00000599833 DHX36Q9H2U1 1008 aaKnown RBP23.55■■□□□ 1.36
SHKBP1-221ENST00000599833 ELP3Q9H9T3 547 aa23.55■■□□□ 1.36
SHKBP1-221ENST00000599833 M0R2C6 588 aa23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 ZFYP08048 801 aaPredicted RBP23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 ZSCAN29Q8IWY8 852 aaPredicted RBP23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 EVI5LQ96CN4 794 aa23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 STRBPQ96SI9 672 aaKnown RBP23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 SEC62Q99442 399 aaKnown RBP23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 DCP1AQ9NPI6 582 aaPredicted RBP23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 SAP30BPQ9UHR5 308 aaKnown RBP23.54■■□□□ 1.36
SHKBP1-221ENST00000599833 SPDYE5A6NIY4 337 aa23.53■■□□□ 1.36
SHKBP1-221ENST00000599833 ZMYM1Q5SVZ6 1142 aa23.53■■□□□ 1.36
SHKBP1-221ENST00000599833 SLC10A4Q96EP9 437 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms