RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PLCG2P16885 1265 aa16.83■□□□□ 0.28
UPF1-205ENST00000598209 IRX6P78412 446 aaPredicted RBP16.83■□□□□ 0.28
UPF1-205ENST00000598209 MKRN3Q13064 507 aaKnown RBP16.83■□□□□ 0.28
UPF1-205ENST00000598209 TMED8Q6PL24 325 aaPredicted RBP16.83■□□□□ 0.28
UPF1-205ENST00000598209 MIGA2Q7L4E1 593 aa16.83■□□□□ 0.28
UPF1-205ENST00000598209 ZSCAN29Q8IWY8 852 aaPredicted RBP16.83■□□□□ 0.28
UPF1-205ENST00000598209 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.83■□□□□ 0.28
UPF1-205ENST00000598209 GPATCH3Q96I76 525 aa16.83■□□□□ 0.28
UPF1-205ENST00000598209 BEGAINQ9BUH8 593 aa16.83■□□□□ 0.28
UPF1-205ENST00000598209 MYH1P12882 1939 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 MAP3K9P80192 1104 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 ANKRD45Q5TZF3 282 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 SPRYD7Q5W111 196 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.82■□□□□ 0.28
UPF1-205ENST00000598209 SH3BP5LQ7L8J4 393 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 CSRNP1Q96S65 589 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 ZNF341Q9BYN7 854 aa16.82■□□□□ 0.28
UPF1-205ENST00000598209 RWDD1Q9H446 243 aaPredicted RBP16.82■□□□□ 0.28
UPF1-205ENST00000598209 ZBTB47Q9UFB7 747 aaPredicted RBP16.82■□□□□ 0.28
UPF1-205ENST00000598209 DDTLA6NHG4 134 aaPredicted RBP16.81■□□□□ 0.28
UPF1-205ENST00000598209 PDE6AP16499 860 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 DYNLL1P63167 89 aaKnown RBP16.81■□□□□ 0.28
UPF1-205ENST00000598209 VGLL4Q14135 290 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 SLC9C2Q5TAH2 1124 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 TSHZ3Q63HK5 1081 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 MIGA1Q8NAN2 632 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 WNK4Q96J92 1243 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 WRNIP1Q96S55 665 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 OSBPL5Q9H0X9 879 aaPredicted RBP16.81■□□□□ 0.28
UPF1-205ENST00000598209 ELP3Q9H9T3 547 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 CSADQ9Y600 493 aa16.81■□□□□ 0.28
UPF1-205ENST00000598209 COL2A1P02458 1487 aaPredicted RBP16.8■□□□□ 0.28
UPF1-205ENST00000598209 ATRNL1Q5VV63 1379 aa16.8■□□□□ 0.28
UPF1-205ENST00000598209 CTCFP49711 727 aaPredicted RBP16.8■□□□□ 0.28
UPF1-205ENST00000598209 REM2Q8IYK8 340 aaPredicted RBP16.8■□□□□ 0.28
UPF1-205ENST00000598209 OTUD7AQ8TE49 926 aaPredicted RBP16.8■□□□□ 0.28
UPF1-205ENST00000598209 TGFBRAP1Q8WUH2 860 aa16.8■□□□□ 0.28
UPF1-205ENST00000598209 SIPA1L1O43166 1804 aa16.8■□□□□ 0.28
UPF1-205ENST00000598209 TTC41PQ6P2S7 1318 aa16.79■□□□□ 0.28
UPF1-205ENST00000598209 ZNF532Q9HCE3 1301 aa16.79■□□□□ 0.28
UPF1-205ENST00000598209 IGHDP01880 384 aa16.79■□□□□ 0.28
UPF1-205ENST00000598209 ZBTB48P10074 688 aaPredicted RBP16.79■□□□□ 0.28
UPF1-205ENST00000598209 CERS3Q8IU89 383 aa16.79■□□□□ 0.28
UPF1-205ENST00000598209 ZKSCAN4Q969J2 545 aaPredicted RBP16.79■□□□□ 0.28
UPF1-205ENST00000598209 OPTNQ96CV9 577 aa16.79■□□□□ 0.28
UPF1-205ENST00000598209 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.79■□□□□ 0.282e-6■■■■□ 21.3
UPF1-205ENST00000598209 ZNF112Q9UJU3 913 aa16.79■□□□□ 0.28
UPF1-205ENST00000598209 NAV1Q8NEY1 1877 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 FLT1P17948 1338 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 TCRBV5S4A2TA0A5A2 114 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 CA12O43570 354 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 HSPA8P11142 646 aaKnown RBP16.78■□□□□ 0.28
UPF1-205ENST00000598209 INPP5BP32019 993 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 GJA5P36382 358 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 MAPKAPK5Q8IW41 473 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 SMC5Q8IY18 1101 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 SNCAIPQ9Y6H5 919 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 DOCK1Q14185 1865 aa16.78■□□□□ 0.28
UPF1-205ENST00000598209 MAGEB6P1A0A0J9YX57 407 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 ERC2O15083 957 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 SLURP2P0DP57 97 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 MX1P20591 662 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 ADD2P35612 726 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 MAP3K10Q02779 954 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 SREBF2Q12772 1141 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 CNKSR2Q8WXI2 1034 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 RIOK1Q9BRS2 568 aaKnown RBP16.77■□□□□ 0.28
UPF1-205ENST00000598209 TSKSQ9UJT2 592 aa16.77■□□□□ 0.28
UPF1-205ENST00000598209 ATAD5Q96QE3 1844 aa16.77■□□□□ 0.27
UPF1-205ENST00000598209 SALL3Q9BXA9 1300 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 MANSC4A6NHS7 340 aaPredicted RBP16.76■□□□□ 0.27
UPF1-205ENST00000598209 GLRX3O76003 335 aaKnown RBP16.76■□□□□ 0.27
UPF1-205ENST00000598209 USP5P45974 858 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 TM4SF4P48230 202 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 LBX1P52954 281 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 SLFNL1Q499Z3 407 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 B4GALNT3Q6L9W6 998 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 PI4K2BQ8TCG2 481 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 DHX36Q9H2U1 1008 aaKnown RBP16.76■□□□□ 0.27
UPF1-205ENST00000598209 RNF186Q9NXI6 227 aa16.76■□□□□ 0.27
UPF1-205ENST00000598209 CASP8AP2Q9UKL3 1982 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 SPDYE5A6NIY4 337 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 PHF20L1A8MW92 1017 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 TBC1D12O60347 775 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 NOL9Q5SY16 702 aaKnown RBP16.75■□□□□ 0.27
UPF1-205ENST00000598209 ZSCAN25Q6NSZ9 544 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 ERO1BQ86YB8 467 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 KBTBD3Q8NAB2 608 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 OTUD5Q96G74 571 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 LNPKQ9C0E8 428 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 SAGE1Q9NXZ1 904 aa16.75■□□□□ 0.27
UPF1-205ENST00000598209 SAP30BPQ9UHR5 308 aaKnown RBP16.75■□□□□ 0.27
UPF1-205ENST00000598209 DDX60LQ5H9U9 1706 aaKnown RBP16.75■□□□□ 0.27
UPF1-205ENST00000598209 BAZ2AQ9UIF9 1905 aaKnown RBP16.74■□□□□ 0.27
UPF1-205ENST00000598209 FAM196BA6NMK8 535 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 TRPA1O75762 1119 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 CHGBP05060 677 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 INHBEP58166 350 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 UBE3CQ15386 1083 aa16.74■□□□□ 0.27
UPF1-205ENST00000598209 LCORLQ8N3X6 602 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms