RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 GYG1P46976 350 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 KCNJ4P48050 445 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 TAF1CQ15572 869 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-208ENST00000597172 GORABQ5T7V8 394 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 MAFAQ8NHW3 353 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-208ENST00000597172 U2AF1L4Q8WU68 220 aaKnown RBP11.49□□□□□ -0.57
TRIM28-208ENST00000597172 SNX27Q96L92 541 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 ARHGAP39Q9C0H5 1083 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 BOLA2Q9H3K6 86 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 A0A1B0GUL6 1792 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 UNCXA6NJT0 531 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 WNT10BO00744 389 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 ERC2O15083 957 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 GLRX3O76003 335 aaKnown RBP11.48□□□□□ -0.57
TRIM28-208ENST00000597172 ECM2O94769 699 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-208ENST00000597172 GJA5P36382 358 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 MAP3K11Q16584 847 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 CCDC158Q5M9N0 1113 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 TTC39AQ5SRH9 613 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.48□□□□□ -0.57
TRIM28-208ENST00000597172 GPATCH3Q96I76 525 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 ZNF512BQ96KM6 892 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-208ENST00000597172 FAM161BQ96MY7 647 aa11.48□□□□□ -0.57
TRIM28-208ENST00000597172 ZMYND8Q9ULU4 1186 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-208ENST00000597172 PPP1R12BO60237 982 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 MAP4K4O95819 1239 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 ARID4AP29374 1257 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 HIBADHP31937 336 aaKnown RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 GRK4P32298 578 aa11.47□□□□□ -0.57
TRIM28-208ENST00000597172 MCAMP43121 646 aa11.47□□□□□ -0.57
TRIM28-208ENST00000597172 MAGEA10P43363 369 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 LACTBP83111 547 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 BMP2KLQ5H9B9 411 aa11.47□□□□□ -0.57
TRIM28-208ENST00000597172 HAUS7Q99871 368 aa11.47□□□□□ -0.57
TRIM28-208ENST00000597172 UBE2OQ9C0C9 1292 aaKnown RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 BIN2Q9UBW5 565 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-208ENST00000597172 NDUFB9Q9Y6M9 179 aa11.47□□□□□ -0.57
TRIM28-208ENST00000597172 SYNGAP1Q96PV0 1343 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 ZBTB22O15209 634 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 SGPL1O95470 568 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 UQCRFS1P1P0C7P4 283 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 SDSP20132 328 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 UBXN2AP68543 259 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 CAVIN4Q5BKX8 364 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 PI16Q6UXB8 463 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 APOBEC3FQ8IUX4 373 aaKnown RBP11.46□□□□□ -0.57
TRIM28-208ENST00000597172 OGFOD1Q8N543 542 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 EDC3Q96F86 508 aaKnown RBP11.46□□□□□ -0.57
TRIM28-208ENST00000597172 SNRKQ9NRH2 765 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 HMG20BQ9P0W2 317 aa11.46□□□□□ -0.57
TRIM28-208ENST00000597172 MED23Q9ULK4 1368 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 USP17L3A6NCW0 530 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 USP17L4A6NCW7 530 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 WDHD1O75717 1129 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-208ENST00000597172 TFRCP02786 760 aaKnown RBP11.45□□□□□ -0.58
TRIM28-208ENST00000597172 IL1R1P14778 569 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 ZAP70P43403 619 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 RASGRF1Q13972 1273 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 USP17L1Q7RTZ2 530 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 C7orf61Q8IZ16 206 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 TDRD7Q8NHU6 1098 aaKnown RBP11.45□□□□□ -0.58
TRIM28-208ENST00000597172 RAET1EQ8TD07 263 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 TRIM47Q96LD4 638 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 ANTXR1Q9H6X2 564 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 CD209Q9NNX6 404 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 SRRDQ9UH36 339 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 IQSEC3Q9UPP2 1182 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-208ENST00000597172 LAMB1P07942 1786 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 ARAP2Q8WZ64 1704 aa11.45□□□□□ -0.58
TRIM28-208ENST00000597172 CYP2E1P05181 493 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-208ENST00000597172 TJAP1Q5JTD0 557 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 ZNF804AQ7Z570 1209 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 VPS37DQ86XT2 251 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 SPATA5Q8NB90 893 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 BRI3BPQ8WY22 251 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 MS4A4AQ96JQ5 239 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 DNAJC2Q99543 621 aaKnown RBP11.44□□□□□ -0.58
TRIM28-208ENST00000597172 CDX2Q99626 313 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-208ENST00000597172 GNL3LQ9NVN8 582 aaKnown RBP11.44□□□□□ -0.58
TRIM28-208ENST00000597172 ALPK3Q96L96 1907 aa11.44□□□□□ -0.58
TRIM28-208ENST00000597172 TRIM6-TRIM34B2RNG4 842 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 GOLIM4O00461 696 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 TLR2O60603 784 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 SYN1P17600 705 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 CAPN2P17655 700 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 HOXD10P28358 340 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 RILPL2Q969X0 211 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 EVI5LQ96CN4 794 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 PAWRQ96IZ0 340 aaKnown RBP11.43□□□□□ -0.58
TRIM28-208ENST00000597172 COA1Q9GZY4 146 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 UNC93B1Q9H1C4 597 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 DEFB129Q9H1M3 183 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 PAG1Q9NWQ8 432 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 ZSWIM8A7E2V4 1837 aa11.43□□□□□ -0.58
TRIM28-208ENST00000597172 CCL15-CCL14A0A0B4J2E2 113 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 SEMA3EO15041 775 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 IREB2P48200 963 aaKnown RBP11.42□□□□□ -0.58
TRIM28-208ENST00000597172 CCL15Q16663 113 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 ZNF697Q5TEC3 545 aa11.42□□□□□ -0.58
TRIM28-208ENST00000597172 TBC1D9Q6ZT07 1266 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms