RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 SLC24A3Q9HC58 644 aa9.83□□□□□ -0.84
SMAD4-204ENST00000586253 IQSEC3Q9UPP2 1182 aaPredicted RBP9.83□□□□□ -0.84
SMAD4-204ENST00000586253 COL1A1P02452 1464 aaPredicted RBP9.83□□□□□ -0.84
SMAD4-204ENST00000586253 SALL1Q9NSC2 1324 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 GRXCR2A6NFK2 248 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 UQCRFS1P1P0C7P4 283 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 RASGRF1Q13972 1273 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 AACSQ86V21 672 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 ZGPATQ8N5A5 531 aaKnown RBP9.82□□□□□ -0.84
SMAD4-204ENST00000586253 CERS5Q8N5B7 392 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 SMC1BQ8NDV3 1235 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 GCC1Q96CN9 775 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 DBNDD2Q9BQY9 259 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 MXD3Q9BW11 206 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 RWDD1Q9H446 243 aaPredicted RBP9.82□□□□□ -0.84
SMAD4-204ENST00000586253 IL1RAPL2Q9NP60 686 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 RBM27Q9P2N5 1060 aaKnown RBP9.82□□□□□ -0.84
SMAD4-204ENST00000586253 DBNLQ9UJU6 430 aaKnown RBP9.82□□□□□ -0.84
SMAD4-204ENST00000586253 HDAC9Q9UKV0 1011 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 MAST3O60307 1309 aa9.82□□□□□ -0.84
SMAD4-204ENST00000586253 IGSF3O75054 1194 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 IFIT2P09913 472 aaKnown RBP9.81□□□□□ -0.84
SMAD4-204ENST00000586253 HDLBPQ00341 1268 aaKnown RBP9.81□□□□□ -0.84
SMAD4-204ENST00000586253 FSTL1Q12841 308 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 CHAF1AQ13111 956 aaPredicted RBP9.81□□□□□ -0.84
SMAD4-204ENST00000586253 KIF4BQ2VIQ3 1234 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 TTC39AQ5SRH9 613 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 KIAA0825Q8IV33 1275 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 MTMR14Q8NCE2 650 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 MRIQ9BWK5 157 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 CCDC8Q9H0W5 538 aaPredicted RBP9.81□□□□□ -0.84
SMAD4-204ENST00000586253 MYOZ2Q9NPC6 264 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 JAG2Q9Y219 1238 aa9.81□□□□□ -0.84
SMAD4-204ENST00000586253 AKAP11Q9UKA4 1901 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 SHTN1A0MZ66 631 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 APBB1O00213 710 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 MCAMP43121 646 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 IRX6P78412 446 aaPredicted RBP9.8□□□□□ -0.84
SMAD4-204ENST00000586253 EAPPQ56P03 285 aaPredicted RBP9.8□□□□□ -0.84
SMAD4-204ENST00000586253 SPATA5Q8NB90 893 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 TRPM4Q8TD43 1214 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.8□□□□□ -0.84
SMAD4-204ENST00000586253 MTRQ99707 1265 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 TLR7Q9NYK1 1049 aaKnown RBP9.8□□□□□ -0.84
SMAD4-204ENST00000586253 HMG20BQ9P0W2 317 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 PGAP2Q9UHJ9 254 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 SERPINA10Q9UK55 444 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 PNMA3Q9UL41 463 aa9.8□□□□□ -0.84
SMAD4-204ENST00000586253 TTF2Q9UNY4 1162 aaKnown RBP9.8□□□□□ -0.84
SMAD4-204ENST00000586253 ZMYND10O75800 440 aa9.79□□□□□ -0.84
SMAD4-204ENST00000586253 EGFRP00533 1210 aa9.79□□□□□ -0.84
SMAD4-204ENST00000586253 HIRAP54198 1017 aaPredicted RBP9.79□□□□□ -0.84
SMAD4-204ENST00000586253 TBC1D10BQ4KMP7 808 aaPredicted RBP9.79□□□□□ -0.84
SMAD4-204ENST00000586253 SPTY2D1Q68D10 685 aaPredicted RBP9.79□□□□□ -0.84
SMAD4-204ENST00000586253 NUDT18Q6ZVK8 323 aa9.79□□□□□ -0.84
SMAD4-204ENST00000586253 SMC5Q8IY18 1101 aa9.79□□□□□ -0.84
SMAD4-204ENST00000586253 ZBED3Q96IU2 234 aaPredicted RBP9.79□□□□□ -0.84
SMAD4-204ENST00000586253 PITPNM2Q9BZ72 1349 aa9.79□□□□□ -0.84
SMAD4-204ENST00000586253 ECM29Q5VYK3 1845 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 F8W031 263 aaPredicted RBP9.78□□□□□ -0.84
SMAD4-204ENST00000586253 WNT10BO00744 389 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 LDHBP07195 334 aaKnown RBP9.78□□□□□ -0.84
SMAD4-204ENST00000586253 APLP1P51693 650 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 C1QTNF8P60827 252 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 SCARF1Q14162 830 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 DLGAP5Q15398 846 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 CFAP100Q494V2 611 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 ZNF516Q92618 1163 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 TEKT1Q969V4 418 aa9.78□□□□□ -0.84
SMAD4-204ENST00000586253 MYO1BO43795 1136 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 SMARCA5O60264 1052 aaPredicted RBP9.77□□□□□ -0.85
SMAD4-204ENST00000586253 IGHDP01880 384 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 ATP5JP18859 108 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 PRDX5P30044 214 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 CRKP46108 304 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 GRIK5Q16478 980 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 RBM26Q5T8P6 1007 aaKnown RBP9.77□□□□□ -0.85
SMAD4-204ENST00000586253 TMED8Q6PL24 325 aaPredicted RBP9.77□□□□□ -0.85
SMAD4-204ENST00000586253 HHIPL2Q6UWX4 724 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 PI16Q6UXB8 463 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 SLF2Q8IX21 1173 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 CNTROBQ8N137 903 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 GPATCH3Q96I76 525 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 ZDHHC15Q96MV8 337 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 ECHDC1Q9NTX5 307 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 ABCF2Q9UG63 623 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 TTC41PQ6P2S7 1318 aa9.77□□□□□ -0.85
SMAD4-204ENST00000586253 MAST2Q6P0Q8 1798 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 CYP2E1P05181 493 aaPredicted RBP9.76□□□□□ -0.85
SMAD4-204ENST00000586253 NEFLP07196 543 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 ZAP70P43403 619 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 TTF1Q15361 905 aaPredicted RBP9.76□□□□□ -0.85
SMAD4-204ENST00000586253 NBPF9Q3BBW0 867 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 ANKRD45Q5TZF3 282 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 MAP1SQ66K74 1059 aaPredicted RBP9.76□□□□□ -0.85
SMAD4-204ENST00000586253 CDC37L1Q7L3B6 337 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 DCPSQ96C86 337 aaKnown RBP9.76□□□□□ -0.85
SMAD4-204ENST00000586253 PRMT6Q96LA8 375 aaPredicted RBP9.76□□□□□ -0.85
SMAD4-204ENST00000586253 GGA3Q9NZ52 723 aa9.76□□□□□ -0.85
SMAD4-204ENST00000586253 DOCK2Q92608 1830 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms