RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.59■□□□□ 0.57
CLIP3-202ENST00000585466 ZNF341Q9BYN7 854 aa18.59■□□□□ 0.57
CLIP3-202ENST00000585466 NDUFB9Q9Y6M9 179 aa18.59■□□□□ 0.57
CLIP3-202ENST00000585466 COL2A1P02458 1487 aaPredicted RBP18.58■□□□□ 0.57
CLIP3-202ENST00000585466 HMMRO75330 724 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 INHBEP58166 350 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 GSTO1P78417 241 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 NOM1Q5C9Z4 860 aaKnown RBP18.58■□□□□ 0.56
CLIP3-202ENST00000585466 DCAF15Q66K64 600 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 HOOK2Q96ED9 719 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 KIF1BPQ96EK5 621 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 CHMP4BQ9H444 224 aaKnown RBP18.58■□□□□ 0.56
CLIP3-202ENST00000585466 LRP2BPQ9P2M1 347 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 PHIPQ8WWQ0 1821 aa18.58■□□□□ 0.56
CLIP3-202ENST00000585466 PHF20L1A8MW92 1017 aa18.57■□□□□ 0.56
CLIP3-202ENST00000585466 BRI3BPQ8WY22 251 aa18.57■□□□□ 0.56
CLIP3-202ENST00000585466 ABHD8Q96I13 439 aa18.57■□□□□ 0.56
CLIP3-202ENST00000585466 MCOLN1Q9GZU1 580 aa18.57■□□□□ 0.56
CLIP3-202ENST00000585466 ANTXR1Q9H6X2 564 aa18.57■□□□□ 0.56
CLIP3-202ENST00000585466 CSADQ9Y600 493 aa18.57■□□□□ 0.56
CLIP3-202ENST00000585466 DOCK1Q14185 1865 aa18.56■□□□□ 0.56
CLIP3-202ENST00000585466 MAP4K4O95819 1239 aaPredicted RBP18.56■□□□□ 0.56
CLIP3-202ENST00000585466 LDHCP07864 332 aa18.56■□□□□ 0.56
CLIP3-202ENST00000585466 NOL9Q5SY16 702 aaKnown RBP18.56■□□□□ 0.56
CLIP3-202ENST00000585466 SH3RF3Q8TEJ3 882 aaPredicted RBP18.56■□□□□ 0.56
CLIP3-202ENST00000585466 ZNF296Q8WUU4 475 aaPredicted RBP18.56■□□□□ 0.56
CLIP3-202ENST00000585466 OTUD5Q96G74 571 aa18.56■□□□□ 0.56
CLIP3-202ENST00000585466 PTPRFP10586 1907 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 GPR25O00155 361 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 APBB1O00213 710 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 IGSF3O75054 1194 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 RAB11FIP3O75154 756 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 RRP1P56182 461 aaKnown RBP18.55■□□□□ 0.56
CLIP3-202ENST00000585466 PPP4CP60510 307 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 PICALMQ13492 652 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 NAA16Q6N069 864 aaPredicted RBP18.55■□□□□ 0.56
CLIP3-202ENST00000585466 ERO1BQ86YB8 467 aa18.55■□□□□ 0.56
CLIP3-202ENST00000585466 IRF6O14896 467 aa18.54■□□□□ 0.56
CLIP3-202ENST00000585466 ALDH1A1P00352 501 aa18.54■□□□□ 0.56
CLIP3-202ENST00000585466 PPIL2Q13356 520 aa18.54■□□□□ 0.56
CLIP3-202ENST00000585466 DGKZQ13574 1117 aa18.53■□□□□ 0.56
CLIP3-202ENST00000585466 DDX60LQ5H9U9 1706 aaKnown RBP18.53■□□□□ 0.56
CLIP3-202ENST00000585466 CLASRPQ8N2M8 674 aaKnown RBP18.53■□□□□ 0.56
CLIP3-202ENST00000585466 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLIP3-202ENST00000585466 YTHDC1Q96MU7 727 aaKnown RBP18.53■□□□□ 0.56
CLIP3-202ENST00000585466 OSBPL5Q9H0X9 879 aaPredicted RBP18.53■□□□□ 0.56
CLIP3-202ENST00000585466 AATFQ9NY61 560 aaKnown RBP eCLIP18.53■□□□□ 0.56
CLIP3-202ENST00000585466 ATAD5Q96QE3 1844 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 CCL15-CCL14A0A0B4J2E2 113 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 GTF2A2P52657 109 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 CAP1Q01518 475 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 PPATQ06203 517 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 CRHR2Q13324 411 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 MOGSQ13724 837 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 CCL15Q16663 113 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 TEX11Q8IYF3 940 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 FAM43AQ8N2R8 423 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 KCNH4Q9UQ05 1017 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 PCDHB15Q9Y5E8 787 aa18.52■□□□□ 0.56
CLIP3-202ENST00000585466 TBC1D12O60347 775 aa18.51■□□□□ 0.55
CLIP3-202ENST00000585466 DYNLL1P63167 89 aaKnown RBP18.51■□□□□ 0.55
CLIP3-202ENST00000585466 FLT1P17948 1338 aa18.5■□□□□ 0.55
CLIP3-202ENST00000585466 FAM196BA6NMK8 535 aa18.5■□□□□ 0.55
CLIP3-202ENST00000585466 SMARCA5O60264 1052 aaPredicted RBP18.5■□□□□ 0.55
CLIP3-202ENST00000585466 IDH1O75874 414 aaKnown RBP18.5■□□□□ 0.55
CLIP3-202ENST00000585466 CYP7A1P22680 504 aa18.5■□□□□ 0.55
CLIP3-202ENST00000585466 RRP1BQ14684 758 aaKnown RBP18.5■□□□□ 0.55
CLIP3-202ENST00000585466 CTU1Q7Z7A3 348 aaKnown RBP18.5■□□□□ 0.55
CLIP3-202ENST00000585466 ZSCAN29Q8IWY8 852 aaPredicted RBP18.5■□□□□ 0.55
CLIP3-202ENST00000585466 DCTPP1Q9H773 170 aa18.5■□□□□ 0.55
CLIP3-202ENST00000585466 MYH1P12882 1939 aa18.5■□□□□ 0.55
CLIP3-202ENST00000585466 HTTP42858 3142 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 MYH7P12883 1935 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 BTBD19C9JJ37 291 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 FKTNO75072 461 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 IFIT2P09913 472 aaKnown RBP18.49■□□□□ 0.55
CLIP3-202ENST00000585466 SNAPC2Q13487 334 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 SCYL3Q8IZE3 742 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 MAGEB6Q8N7X4 407 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 EDC3Q96F86 508 aaKnown RBP18.49■□□□□ 0.55
CLIP3-202ENST00000585466 DNAJC18Q9H819 358 aa18.49■□□□□ 0.55
CLIP3-202ENST00000585466 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.49■□□□□ 0.55
CLIP3-202ENST00000585466 TCRBV5S4A2TA0A5A2 114 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 BAG3O95817 575 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 CETPP11597 493 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 PLCG2P16885 1265 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 PTPRAP18433 802 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 METTL16Q86W50 562 aaKnown RBP18.48■□□□□ 0.55
CLIP3-202ENST00000585466 TGFBRAP1Q8WUH2 860 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 RIOK1Q9BRS2 568 aaKnown RBP18.48■□□□□ 0.55
CLIP3-202ENST00000585466 LRRCC1Q9C099 1032 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 ZSWIM8A7E2V4 1837 aa18.48■□□□□ 0.55
CLIP3-202ENST00000585466 CTNND1O60716 968 aaKnown RBP18.47■□□□□ 0.55
CLIP3-202ENST00000585466 ATP5JP18859 108 aa18.47■□□□□ 0.55
CLIP3-202ENST00000585466 OTUD7BQ6GQQ9 843 aa18.47■□□□□ 0.55
CLIP3-202ENST00000585466 TMED8Q6PL24 325 aaPredicted RBP18.47■□□□□ 0.55
CLIP3-202ENST00000585466 MAPKAPK5Q8IW41 473 aa18.47■□□□□ 0.55
CLIP3-202ENST00000585466 MIGA1Q8NAN2 632 aa18.47■□□□□ 0.55
CLIP3-202ENST00000585466 CRBNQ96SW2 442 aa18.47■□□□□ 0.55
CLIP3-202ENST00000585466 ZCCHC17Q9NP64 241 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms