RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 ADGRA2Q96PE1 1338 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 MYH13Q9UKX3 1938 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 CENPFP49454 3210 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 A0A1B0GUL7 405 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 A0A1W2PPC1 479 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 HOXD10P28358 340 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 CTGFP29279 349 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 PSMC4P43686 418 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 TFCP2Q12800 502 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 MVPQ14764 893 aaKnown RBP13.13□□□□□ -0.31
RFFL-209ENST00000581265 GPAT2Q6NUI2 795 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 SH3BP5LQ7L8J4 393 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 TRIM47Q96LD4 638 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 SRRDQ9UH36 339 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 ZHX2Q9Y6X8 837 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 AK9Q5TCS8 1911 aa13.13□□□□□ -0.31
RFFL-209ENST00000581265 GPR75-ASB3A0A0A6YYF3 556 aa13.12□□□□□ -0.31
RFFL-209ENST00000581265 IPO8O15397 1037 aaKnown RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 CTNND1O60716 968 aaKnown RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 NPM3O75607 178 aaKnown RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 PTPRAP18433 802 aa13.12□□□□□ -0.31
RFFL-209ENST00000581265 FASTKD5Q7L8L6 764 aaKnown RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 DZIP1Q86YF9 867 aaKnown RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 SCYL3Q8IZE3 742 aa13.12□□□□□ -0.31
RFFL-209ENST00000581265 LRCH3Q96II8 777 aa13.12□□□□□ -0.31
RFFL-209ENST00000581265 PICK1Q9NRD5 415 aa13.12□□□□□ -0.31
RFFL-209ENST00000581265 BIN2Q9UBW5 565 aaPredicted RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 AFG3L2Q9Y4W6 797 aa13.12□□□□□ -0.31
RFFL-209ENST00000581265 MKI67P46013 3256 aaKnown RBP13.12□□□□□ -0.31
RFFL-209ENST00000581265 RFX7Q2KHR2 1363 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 A0A0G2JLL6 359 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 DDTLA6NHG4 134 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 ECM2O94769 699 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 FMNL1O95466 1100 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 BCRP11274 1271 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 OSBPP22059 807 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 BTDP43251 543 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 MECOMQ03112 1051 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 ERICH6Q7L0X2 663 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 PRRT2Q7Z6L0 340 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 ZSCAN29Q8IWY8 852 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 ZNF384Q8TF68 577 aa13.11□□□□□ -0.31
RFFL-209ENST00000581265 PARK7Q99497 189 aaKnown RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 DDX4Q9NQI0 724 aaKnown RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.11□□□□□ -0.31
RFFL-209ENST00000581265 MYH2Q9UKX2 1941 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 SOX1O00570 391 aaPredicted RBP13.1□□□□□ -0.31
RFFL-209ENST00000581265 ZBTB7BO15156 539 aaPredicted RBP13.1□□□□□ -0.31
RFFL-209ENST00000581265 TBC1D12O60347 775 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 EVI5O60447 810 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 MAP4K4O95819 1239 aaPredicted RBP13.1□□□□□ -0.31
RFFL-209ENST00000581265 CYP2C8P10632 490 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 TRIM27P14373 513 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 RHBDL3P58872 404 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 MTFR1Q15390 333 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 NEUROD6Q96NK8 337 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 PRO3102Q9H379 93 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 HMG20BQ9P0W2 317 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 SLC45A1Q9Y2W3 748 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 MROH7-TTC4A0A0A0MT08 1334 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 CEP290O15078 2479 aa13.1□□□□□ -0.31
RFFL-209ENST00000581265 GNAI2P04899 355 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 LDHCP07864 332 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 GRK4P32298 578 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 ATF7IPQ6VMQ6 1270 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 DEFB123Q8N688 67 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 SPATA5Q8NB90 893 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 RAET1EQ8TD07 263 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 SHISA4Q96DD7 197 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 BRCA2P51587 3418 aa13.09□□□□□ -0.31
RFFL-209ENST00000581265 FARP2O94887 1054 aaPredicted RBP13.08□□□□□ -0.32
RFFL-209ENST00000581265 SLURP2P0DP57 97 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 CCL5P13501 91 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 ARID4AP29374 1257 aaPredicted RBP13.08□□□□□ -0.32
RFFL-209ENST00000581265 FCGRTP55899 365 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 UBXN2AP68543 259 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 GSTO1P78417 241 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 G3BP1Q13283 466 aaKnown RBP eCLIP13.08□□□□□ -0.32
RFFL-209ENST00000581265 PICALMQ13492 652 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 GORABQ5T7V8 394 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 NSUN4Q96CB9 384 aaKnown RBP13.08□□□□□ -0.32
RFFL-209ENST00000581265 RNF208Q9H0X6 261 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 STAP2Q9UGK3 403 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 ZSWIM8A7E2V4 1837 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 MYPNQ86TC9 1320 aa13.08□□□□□ -0.32
RFFL-209ENST00000581265 PNMA6EA0A0J9YXQ4 647 aa13.07□□□□□ -0.32
RFFL-209ENST00000581265 BCAR3O75815 825 aa13.07□□□□□ -0.32
RFFL-209ENST00000581265 GJB1P08034 283 aa13.07□□□□□ -0.32
RFFL-209ENST00000581265 GJA8P48165 433 aa13.07□□□□□ -0.32
RFFL-209ENST00000581265 PI16Q6UXB8 463 aa13.07□□□□□ -0.32
RFFL-209ENST00000581265 TBC1D9Q6ZT07 1266 aa13.07□□□□□ -0.32
RFFL-209ENST00000581265 COL25A1Q9BXS0 654 aaPredicted RBP13.07□□□□□ -0.32
RFFL-209ENST00000581265 TRIM75PA6NK02 468 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 UQCRFS1P1P0C7P4 283 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 MCAMP43121 646 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 PRKCZQ05513 592 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 GADL1Q6ZQY3 521 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 FRAT1Q92837 279 aaPredicted RBP13.06□□□□□ -0.32
RFFL-209ENST00000581265 OSBPL5Q9H0X9 879 aaPredicted RBP13.06□□□□□ -0.32
RFFL-209ENST00000581265 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms