RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 TEX11Q8IYF3 940 aa23.47■■□□□ 1.35
SS18-208ENST00000577751 CLMNQ96JQ2 1002 aa23.47■■□□□ 1.35
SS18-208ENST00000577751 MAP3K9P80192 1104 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 PICALMQ13492 652 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 SLC9C2Q5TAH2 1124 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 ATRNL1Q5VV63 1379 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 TTC41PQ6P2S7 1318 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.46■■□□□ 1.35
SS18-208ENST00000577751 SLC10A4Q96EP9 437 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 GPATCH3Q96I76 525 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 SALL3Q9BXA9 1300 aa23.46■■□□□ 1.35
SS18-208ENST00000577751 LAMB1P07942 1786 aa23.45■■□□□ 1.34
SS18-208ENST00000577751 COL2A1P02458 1487 aaPredicted RBP23.45■■□□□ 1.34
SS18-208ENST00000577751 DDTLA6NHG4 134 aaPredicted RBP23.45■■□□□ 1.34
SS18-208ENST00000577751 PDE6AP16499 860 aa23.45■■□□□ 1.34
SS18-208ENST00000577751 DYNLL1P63167 89 aaKnown RBP23.45■■□□□ 1.34
SS18-208ENST00000577751 MAP3K10Q02779 954 aa23.45■■□□□ 1.34
SS18-208ENST00000577751 MIGA2Q7L4E1 593 aa23.45■■□□□ 1.34
SS18-208ENST00000577751 CERS3Q8IU89 383 aa23.45■■□□□ 1.34
SS18-208ENST00000577751 OTUD7AQ8TE49 926 aaPredicted RBP23.45■■□□□ 1.34
SS18-208ENST00000577751 MYH7P12883 1935 aa23.45■■□□□ 1.34
SS18-208ENST00000577751 TCRBV5S4A2TA0A5A2 114 aa23.44■■□□□ 1.34
SS18-208ENST00000577751 SPRYD7Q5W111 196 aa23.44■■□□□ 1.34
SS18-208ENST00000577751 TSHZ3Q63HK5 1081 aa23.44■■□□□ 1.34
SS18-208ENST00000577751 REM2Q8IYK8 340 aaPredicted RBP23.44■■□□□ 1.34
SS18-208ENST00000577751 CSRNP1Q96S65 589 aa23.44■■□□□ 1.34
SS18-208ENST00000577751 ZNF341Q9BYN7 854 aa23.44■■□□□ 1.34
SS18-208ENST00000577751 OSBPL5Q9H0X9 879 aaPredicted RBP23.44■■□□□ 1.34
SS18-208ENST00000577751 ZNF112Q9UJU3 913 aa23.44■■□□□ 1.34
SS18-208ENST00000577751 ZNF532Q9HCE3 1301 aa23.43■■□□□ 1.34
SS18-208ENST00000577751 ZSCAN29Q8IWY8 852 aaPredicted RBP23.43■■□□□ 1.34
SS18-208ENST00000577751 MIGA1Q8NAN2 632 aa23.43■■□□□ 1.34
SS18-208ENST00000577751 PI4K2BQ8TCG2 481 aa23.43■■□□□ 1.34
SS18-208ENST00000577751 RIOK1Q9BRS2 568 aaKnown RBP23.43■■□□□ 1.34
SS18-208ENST00000577751 ZBTB47Q9UFB7 747 aaPredicted RBP23.43■■□□□ 1.34
SS18-208ENST00000577751 FOXN1O15353 648 aa23.42■■□□□ 1.34
SS18-208ENST00000577751 ZBTB48P10074 688 aaPredicted RBP23.42■■□□□ 1.34
SS18-208ENST00000577751 ADD2P35612 726 aa23.42■■□□□ 1.34
SS18-208ENST00000577751 VGLL4Q14135 290 aa23.42■■□□□ 1.34
SS18-208ENST00000577751 TGFBRAP1Q8WUH2 860 aa23.42■■□□□ 1.34
SS18-208ENST00000577751 WNK4Q96J92 1243 aa23.42■■□□□ 1.34
SS18-208ENST00000577751 WRNIP1Q96S55 665 aa23.42■■□□□ 1.34
SS18-208ENST00000577751 ERC2O15083 957 aa23.41■■□□□ 1.34
SS18-208ENST00000577751 MX1P20591 662 aa23.41■■□□□ 1.34
SS18-208ENST00000577751 AIDAQ96BJ3 306 aa23.41■■□□□ 1.34
SS18-208ENST00000577751 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.41■■□□□ 1.34
SS18-208ENST00000577751 CSADQ9Y600 493 aa23.41■■□□□ 1.34
SS18-208ENST00000577751 FLT1P17948 1338 aa23.4■■□□□ 1.34
SS18-208ENST00000577751 TBC1D12O60347 775 aa23.4■■□□□ 1.34
SS18-208ENST00000577751 GLRX3O76003 335 aaKnown RBP23.4■■□□□ 1.34
SS18-208ENST00000577751 GJA5P36382 358 aa23.4■■□□□ 1.34
SS18-208ENST00000577751 ELP3Q9H9T3 547 aa23.4■■□□□ 1.34
SS18-208ENST00000577751 STAP2Q9UGK3 403 aa23.4■■□□□ 1.34
SS18-208ENST00000577751 SNCAIPQ9Y6H5 919 aa23.4■■□□□ 1.34
SS18-208ENST00000577751 MAGEB6P1A0A0J9YX57 407 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 PHF20L1A8MW92 1017 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 TM4SF4P48230 202 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 MKRN3Q13064 507 aaKnown RBP23.39■■□□□ 1.33
SS18-208ENST00000577751 UBE3CQ15386 1083 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 MAPKAPK5Q8IW41 473 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 KBTBD3Q8NAB2 608 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 ZKSCAN4Q969J2 545 aaPredicted RBP23.39■■□□□ 1.33
SS18-208ENST00000577751 BEGAINQ9BUH8 593 aa23.39■■□□□ 1.33
SS18-208ENST00000577751 DHX36Q9H2U1 1008 aaKnown RBP23.39■■□□□ 1.33
SS18-208ENST00000577751 SIPA1L1O43166 1804 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 CA12O43570 354 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 SLURP2P0DP57 97 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 INPP5BP32019 993 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 NUCB1Q02818 461 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 SLFNL1Q499Z3 407 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 B4GALNT3Q6L9W6 998 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 ZSCAN25Q6NSZ9 544 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 OPTNQ96CV9 577 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 LNPKQ9C0E8 428 aa23.38■■□□□ 1.33
SS18-208ENST00000577751 SPDYE5A6NIY4 337 aa23.37■■□□□ 1.33
SS18-208ENST00000577751 CHGBP05060 677 aa23.37■■□□□ 1.33
SS18-208ENST00000577751 CTCFP49711 727 aaPredicted RBP23.37■■□□□ 1.33
SS18-208ENST00000577751 PDE1AP54750 535 aa23.37■■□□□ 1.33
SS18-208ENST00000577751 NOL9Q5SY16 702 aaKnown RBP23.37■■□□□ 1.33
SS18-208ENST00000577751 CHD1LQ86WJ1 897 aa23.37■■□□□ 1.33
SS18-208ENST00000577751 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.37■■□□□ 1.33
SS18-208ENST00000577751 PI4KBQ9UBF8 816 aa23.37■■□□□ 1.33
SS18-208ENST00000577751 MYH1P12882 1939 aa23.37■■□□□ 1.33
SS18-208ENST00000577751 ERO1BQ86YB8 467 aa23.36■■□□□ 1.33
SS18-208ENST00000577751 CNKSR2Q8WXI2 1034 aa23.36■■□□□ 1.33
SS18-208ENST00000577751 MANSC4A6NHS7 340 aaPredicted RBP23.35■■□□□ 1.33
SS18-208ENST00000577751 HSPA8P11142 646 aaKnown RBP23.35■■□□□ 1.33
SS18-208ENST00000577751 INHBEP58166 350 aa23.35■■□□□ 1.33
SS18-208ENST00000577751 SREBF2Q12772 1141 aa23.35■■□□□ 1.33
SS18-208ENST00000577751 METTL16Q86W50 562 aaKnown RBP23.35■■□□□ 1.33
SS18-208ENST00000577751 LCORLQ8N3X6 602 aa23.35■■□□□ 1.33
SS18-208ENST00000577751 SAGE1Q9NXZ1 904 aa23.35■■□□□ 1.33
SS18-208ENST00000577751 PALD1Q9ULE6 856 aa23.35■■□□□ 1.33
SS18-208ENST00000577751 USP5P45974 858 aa23.34■■□□□ 1.33
SS18-208ENST00000577751 CRNKL1Q9BZJ0 848 aaKnown RBP23.34■■□□□ 1.33
SS18-208ENST00000577751 RNF186Q9NXI6 227 aa23.34■■□□□ 1.33
SS18-208ENST00000577751 HERC5Q9UII4 1024 aaKnown RBP23.34■■□□□ 1.33
SS18-208ENST00000577751 DDX60LQ5H9U9 1706 aaKnown RBP23.33■■□□□ 1.33
SS18-208ENST00000577751 TESPA1A2RU30 521 aaPredicted RBP23.33■■□□□ 1.33
SS18-208ENST00000577751 PPATQ06203 517 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms