RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 ZNF333Q96JL9 665 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 ISCA1Q9BUE6 129 aa7.62□□□□□ -1.19
VPS53-208ENST00000570650 ANGEL1Q9UNK9 670 aaKnown RBP7.62□□□□□ -1.19
VPS53-208ENST00000570650 TRIOBPQ9H2D6 2365 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 MYO3BQ8WXR4 1341 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 ATP5J2-PTCD1G3V325 749 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 H0YGN5 161 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 IGF2BP3O00425 579 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS53-208ENST00000570650 ZBTB48P10074 688 aaPredicted RBP7.61□□□□□ -1.19
VPS53-208ENST00000570650 ATP2B4P23634 1241 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 MMP14P50281 582 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 CTDSPL2Q05D32 466 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 TRIM26Q12899 539 aaPredicted RBP7.61□□□□□ -1.19
VPS53-208ENST00000570650 SLC4A8Q2Y0W8 1093 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 OTUD7BQ6GQQ9 843 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 NBPF11Q86T75 865 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 HELBQ8NG08 1087 aaPredicted RBP7.61□□□□□ -1.19
VPS53-208ENST00000570650 SLC10A4Q96EP9 437 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 WNK4Q96J92 1243 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 PCMTD1Q96MG8 357 aaPredicted RBP7.61□□□□□ -1.19
VPS53-208ENST00000570650 PLEKHF1Q96S99 279 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 UNC93B1Q9H1C4 597 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 SEC31BQ9NQW1 1179 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 BABAM1Q9NWV8 329 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 HTTP42858 3142 aa7.61□□□□□ -1.19
VPS53-208ENST00000570650 XDHP47989 1333 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 MAPK8IP3Q9UPT6 1336 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 SASH1O94885 1247 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 HSP90B1P14625 803 aaKnown RBP7.6□□□□□ -1.19
VPS53-208ENST00000570650 CTHP32929 405 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PRR20EP86478 221 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PRR20CP86479 221 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PRR20DP86480 221 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PRR20BP86481 221 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PRR20AP86496 221 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 SP3Q02447 781 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 CRHR2Q13324 411 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 MAP3K11Q16584 847 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 SLC9C1Q4G0N8 1177 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 DACT2Q5SW24 774 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PCGF6Q9BYE7 350 aa7.6□□□□□ -1.19
VPS53-208ENST00000570650 PNNQ9H307 717 aaKnown RBP7.6□□□□□ -1.19
VPS53-208ENST00000570650 UNCXA6NJT0 531 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 NRG2O14511 850 aaPredicted RBP7.59□□□□□ -1.19
VPS53-208ENST00000570650 PPP1R12BO60237 982 aaPredicted RBP7.59□□□□□ -1.19
VPS53-208ENST00000570650 TRIM28Q13263 835 aaKnown RBP7.59□□□□□ -1.19
VPS53-208ENST00000570650 ARHGEF6Q15052 776 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 CCDC152Q4G0S7 254 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 STRIP1Q5VSL9 837 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 ZBTB38Q8NAP3 1195 aaPredicted RBP7.59□□□□□ -1.19
VPS53-208ENST00000570650 LRRN4Q8WUT4 740 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 CLMNQ96JQ2 1002 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 MXD3Q9BW11 206 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 CHPF2Q9P2E5 772 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 FZD1Q9UP38 647 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 PTCH2Q9Y6C5 1203 aa7.59□□□□□ -1.19
VPS53-208ENST00000570650 COL1A1P02452 1464 aaPredicted RBP7.59□□□□□ -1.19
VPS53-208ENST00000570650 MED23Q9ULK4 1368 aa7.59□□□□□ -1.2
VPS53-208ENST00000570650 RFC5P40937 340 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 CAP1Q01518 475 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 LAPTM4AQ15012 233 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 LINC01559Q495D7 138 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 ANKRD18AQ8IVF6 992 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 BAP1Q92560 729 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 DEFB129Q9H1M3 183 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 BRCA2P51587 3418 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 LAMB1P07942 1786 aa7.58□□□□□ -1.2
VPS53-208ENST00000570650 CENPFP49454 3210 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 WNT7AO00755 349 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 PDE8AO60658 829 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 AP1G2O75843 785 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 WNT7BP56706 349 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 SH3BP2P78314 561 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 KRT24Q2M2I5 525 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 HDGFL1Q5TGJ6 251 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 KIAA0825Q8IV33 1275 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 DPF3Q92784 378 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 ZBED3Q96IU2 234 aaPredicted RBP7.57□□□□□ -1.2
VPS53-208ENST00000570650 MRGPRX2Q96LB1 330 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 CDC5LQ99459 802 aaKnown RBP7.57□□□□□ -1.2
VPS53-208ENST00000570650 PTPN18Q99952 460 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 COA1Q9GZY4 146 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 DBF4Q9UBU7 674 aaPredicted RBP7.57□□□□□ -1.2
VPS53-208ENST00000570650 PPP2R3BQ9Y5P8 575 aa7.57□□□□□ -1.2
VPS53-208ENST00000570650 SSC5DA1L4H1 1573 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 LCE2BO14633 110 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 MYCP01106 439 aaPredicted RBP7.56□□□□□ -1.2
VPS53-208ENST00000570650 IREB2P48200 963 aaKnown RBP7.56□□□□□ -1.2
VPS53-208ENST00000570650 RIPK4P57078 832 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 LMOD3Q0VAK6 560 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 DLGAP5Q15398 846 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 SUPT20HL1Q3ZLR7 823 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 TTLL5Q6EMB2 1281 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 Q6ZNB5 142 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 ANKRD13AQ8IZ07 590 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 CCDC85AQ96PX6 553 aaPredicted RBP7.56□□□□□ -1.2
VPS53-208ENST00000570650 ZFYVE28Q9HCC9 887 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 HYPKQ9NX55 129 aa7.56□□□□□ -1.2
VPS53-208ENST00000570650 ZNF646O15015 1829 aaPredicted RBP7.56□□□□□ -1.2
VPS53-208ENST00000570650 ZNF804BA4D1E1 1349 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms