RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MECOMQ03112 1051 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 TRIM29Q14134 588 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 SF3B3Q15393 1217 aaKnown RBP11.55□□□□□ -0.56
VPS53-206ENST00000570359 KRT40Q6A162 431 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 CPLX2Q6PUV4 134 aaKnown RBP11.55□□□□□ -0.56
VPS53-206ENST00000570359 ZNF384Q8TF68 577 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 SDF4Q9BRK5 362 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 NYXQ9GZU5 481 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 CCDC39Q9UFE4 941 aa11.55□□□□□ -0.56
VPS53-206ENST00000570359 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS53-206ENST00000570359 BTAF1O14981 1849 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 CNBD1Q8NA66 436 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 CBX8Q9HC52 389 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 DDX19AQ9NUU7 478 aaKnown RBP11.54□□□□□ -0.56
VPS53-206ENST00000570359 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.54□□□□□ -0.56
VPS53-206ENST00000570359 ATRNO75882 1429 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 USP17L12C9JPN9 530 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 USP17L21D6R901 530 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 NDUFA8P51970 172 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 KIF23Q02241 960 aaPredicted RBP11.54□□□□□ -0.56
VPS53-206ENST00000570359 UBE4AQ14139 1066 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 SART3Q15020 963 aaKnown RBP11.54□□□□□ -0.56
VPS53-206ENST00000570359 MYSM1Q5VVJ2 828 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 DZIP1Q86YF9 867 aaKnown RBP11.54□□□□□ -0.56
VPS53-206ENST00000570359 FNBP4Q8N3X1 1017 aaPredicted RBP11.54□□□□□ -0.56
VPS53-206ENST00000570359 LRP5O75197 1615 aa11.54□□□□□ -0.56
VPS53-206ENST00000570359 ZNF804BA4D1E1 1349 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 SSRP1Q08945 709 aaKnown RBP11.53□□□□□ -0.56
VPS53-206ENST00000570359 DIXDC1Q155Q3 683 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 RTN1Q16799 776 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 C11orf57Q6ZUT1 292 aaPredicted RBP11.53□□□□□ -0.56
VPS53-206ENST00000570359 TNKSO95271 1327 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 ZNF165P49910 485 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 DNTTIP2Q5QJE6 756 aaKnown RBP11.53□□□□□ -0.56
VPS53-206ENST00000570359 TMEM87BQ96K49 555 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 CLIC6Q96NY7 704 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 KRT23Q9C075 422 aa11.53□□□□□ -0.56
VPS53-206ENST00000570359 SPTLC2O15270 562 aa11.52□□□□□ -0.56
VPS53-206ENST00000570359 PDIA4P13667 645 aaKnown RBP11.52□□□□□ -0.56
VPS53-206ENST00000570359 TRIM5Q9C035 493 aa11.52□□□□□ -0.56
VPS53-206ENST00000570359 FAM217BQ9NTX9 383 aaPredicted RBP11.52□□□□□ -0.56
VPS53-206ENST00000570359 RCOR1Q9UKL0 485 aa11.52□□□□□ -0.56
VPS53-206ENST00000570359 COL5A3P25940 1745 aaPredicted RBP11.52□□□□□ -0.56
VPS53-206ENST00000570359 CICQ96RK0 1608 aaPredicted RBP11.52□□□□□ -0.57
VPS53-206ENST00000570359 GRIK5Q16478 980 aa11.52□□□□□ -0.57
VPS53-206ENST00000570359 FAM200AQ8TCP9 573 aa11.52□□□□□ -0.57
VPS53-206ENST00000570359 RPGRQ92834 1020 aaKnown RBP11.52□□□□□ -0.57
VPS53-206ENST00000570359 CNNM2Q9H8M5 875 aa11.52□□□□□ -0.57
VPS53-206ENST00000570359 ZKSCAN5Q9Y2L8 839 aa11.52□□□□□ -0.57
VPS53-206ENST00000570359 R3HCC1Q9Y3T6 440 aaKnown RBP11.52□□□□□ -0.57
VPS53-206ENST00000570359 MYH13Q9UKX3 1938 aa11.52□□□□□ -0.57
VPS53-206ENST00000570359 BTBD18B2RXH4 712 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 CDKL5O76039 1030 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 GNAT2P19087 354 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 EVCP57679 992 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 NR5A1Q13285 461 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 ZNF654Q8IZM8 581 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 LINC00301Q8NCQ3 95 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 MRPS27Q92552 414 aaKnown RBP11.51□□□□□ -0.57
VPS53-206ENST00000570359 RIOK1Q9BRS2 568 aaKnown RBP11.51□□□□□ -0.57
VPS53-206ENST00000570359 SAP30BPQ9UHR5 308 aaKnown RBP11.51□□□□□ -0.57
VPS53-206ENST00000570359 MYH2Q9UKX2 1941 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 USP17L8P0C7I0 530 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 ANO1Q5XXA6 986 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 STAG1Q8WVM7 1258 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 QTRT2Q9H974 415 aaKnown RBP11.51□□□□□ -0.57
VPS53-206ENST00000570359 MCM9Q9NXL9 1143 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 NOL7Q9UMY1 257 aaKnown RBP11.51□□□□□ -0.57
VPS53-206ENST00000570359 CHD4Q14839 1912 aa11.51□□□□□ -0.57
VPS53-206ENST00000570359 HSP90AA2PQ14568 343 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 ZRSR1Q15695 479 aaKnown RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 TICAM2Q86XR7 235 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 NSUN4Q96CB9 384 aaKnown RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 VPS54Q9P1Q0 977 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 MROH7-TTC4A0A0A0MT08 1334 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 RTL9Q8NET4 1388 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 F8W031 263 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 WDHD1O75717 1129 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 PLEKHA8P1O95397 391 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 USP5P45974 858 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 FAM160A1Q05DH4 1040 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 SNW1Q13573 536 aaKnown RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 ALX1Q15699 326 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 IFIT1BQ5T764 474 aaKnown RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 OLFM4Q6UX06 510 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 TRIM22Q8IYM9 498 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 ESR2Q92731 530 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 DYNLL2Q96FJ2 89 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 PNPLA7Q6ZV29 1317 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 ARAP2Q8WZ64 1704 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 BCORQ6W2J9 1755 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 FAM205CA6NFA0 338 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 BECN2A8MW95 431 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 GOLGA6L19H0YKK7 550 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 RIMBP2O15034 1052 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 UFL1O94874 794 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 NTRK3Q16288 839 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 CTR9Q6PD62 1173 aa11.5□□□□□ -0.57
VPS53-206ENST00000570359 ENAHQ8N8S7 591 aaPredicted RBP11.5□□□□□ -0.57
VPS53-206ENST00000570359 OXER1Q8TDS5 423 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms