RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ANKRD13CQ8N6S4 541 aa22.93■■□□□ 1.26
CLK3-227ENST00000570296 NCOR1O75376 2440 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 DNAH12Q6ZR08 3092 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 FRAT2O75474 233 aaPredicted RBP22.92■■□□□ 1.26
CLK3-227ENST00000570296 SLC4A2P04920 1241 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 COL6A1P12109 1028 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 SCYL3Q8IZE3 742 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 PICK1Q9NRD5 415 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 ADAMTS8Q9UP79 889 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 IQSEC3Q9UPP2 1182 aaPredicted RBP22.92■■□□□ 1.26
CLK3-227ENST00000570296 AFG3L2Q9Y4W6 797 aa22.92■■□□□ 1.26
CLK3-227ENST00000570296 FLIIQ13045 1269 aa22.91■■□□□ 1.26
CLK3-227ENST00000570296 PHIPQ8WWQ0 1821 aa22.91■■□□□ 1.26
CLK3-227ENST00000570296 DOCK2Q92608 1830 aa22.91■■□□□ 1.26
CLK3-227ENST00000570296 PTPRAP18433 802 aa22.9■■□□□ 1.26
CLK3-227ENST00000570296 PLA2G5P39877 138 aa22.9■■□□□ 1.26
CLK3-227ENST00000570296 TRIM32Q13049 653 aa22.9■■□□□ 1.26
CLK3-227ENST00000570296 TCP10Q12799 353 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 FKBP5Q13451 457 aaPredicted RBP22.89■■□□□ 1.25
CLK3-227ENST00000570296 CAVIN4Q5BKX8 364 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 MAP3K21Q5TCX8 1036 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 LBHD1Q9BQE6 289 aaPredicted RBP22.89■■□□□ 1.25
CLK3-227ENST00000570296 SEMA6BQ9H3T3 888 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 GJD2Q9UKL4 321 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 PNMA3Q9UL41 463 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 AGTPBP1Q9UPW5 1226 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 PLXNB2O15031 1838 aa22.89■■□□□ 1.25
CLK3-227ENST00000570296 DOCK1Q14185 1865 aa22.88■■□□□ 1.25
CLK3-227ENST00000570296 PHF20L1A8MW92 1017 aa22.88■■□□□ 1.25
CLK3-227ENST00000570296 TNFRSF10AO00220 468 aa22.88■■□□□ 1.25
CLK3-227ENST00000570296 LRRC26Q2I0M4 334 aa22.88■■□□□ 1.25
CLK3-227ENST00000570296 ATRNL1Q5VV63 1379 aa22.88■■□□□ 1.25
CLK3-227ENST00000570296 MROH5Q6ZUA9 1318 aa22.87■■□□□ 1.25
CLK3-227ENST00000570296 MAST2Q6P0Q8 1798 aa22.87■■□□□ 1.25
CLK3-227ENST00000570296 EPHA10Q5JZY3 1008 aa22.87■■□□□ 1.25
CLK3-227ENST00000570296 MYBBP1AQ9BQG0 1328 aaKnown RBP22.86■■□□□ 1.25
CLK3-227ENST00000570296 GCLCP48506 637 aaPredicted RBP22.86■■□□□ 1.25
CLK3-227ENST00000570296 NFIAQ12857 509 aa22.86■■□□□ 1.25
CLK3-227ENST00000570296 CDC42EP5Q6NZY7 148 aa22.86■■□□□ 1.25
CLK3-227ENST00000570296 TRIB2Q92519 343 aa22.86■■□□□ 1.25
CLK3-227ENST00000570296 MYH13Q9UKX3 1938 aa22.85■■□□□ 1.25
CLK3-227ENST00000570296 PRKAR2AP13861 404 aaKnown RBP22.85■■□□□ 1.25
CLK3-227ENST00000570296 TJAP1Q5JTD0 557 aa22.85■■□□□ 1.25
CLK3-227ENST00000570296 MYLIPQ8WY64 445 aa22.85■■□□□ 1.25
CLK3-227ENST00000570296 FAM198AQ9UFP1 575 aa22.85■■□□□ 1.25
CLK3-227ENST00000570296 BDP1A6H8Y1 2624 aa22.84■■□□□ 1.25
CLK3-227ENST00000570296 TWISTNBQ3B726 338 aaPredicted RBP22.84■■□□□ 1.25
CLK3-227ENST00000570296 FAM122AQ96E09 287 aa22.84■■□□□ 1.25
CLK3-227ENST00000570296 PUS3Q9BZE2 481 aaKnown RBP22.84■■□□□ 1.25
CLK3-227ENST00000570296 DAGLAQ9Y4D2 1042 aa22.84■■□□□ 1.25
CLK3-227ENST00000570296 LOC285556D6RIA3 1793 aa22.84■■□□□ 1.25
CLK3-227ENST00000570296 LTBP2Q14767 1821 aa22.83■■□□□ 1.25
CLK3-227ENST00000570296 TRIM75PA6NK02 468 aa22.83■■□□□ 1.25
CLK3-227ENST00000570296 APAF1O14727 1248 aa22.83■■□□□ 1.25
CLK3-227ENST00000570296 FOSL2P15408 326 aa22.83■■□□□ 1.25
CLK3-227ENST00000570296 RAPGEFL1Q9UHV5 662 aa22.83■■□□□ 1.25
CLK3-227ENST00000570296 TREML2Q5T2D2 321 aa22.82■■□□□ 1.24
CLK3-227ENST00000570296 PROCA1Q8NCQ7 364 aaPredicted RBP22.82■■□□□ 1.24
CLK3-227ENST00000570296 SPINK5Q9NQ38 1064 aaPredicted RBP22.82■■□□□ 1.24
CLK3-227ENST00000570296 GRM8O00222 908 aa22.81■■□□□ 1.24
CLK3-227ENST00000570296 CTNND1O60716 968 aaKnown RBP22.81■■□□□ 1.24
CLK3-227ENST00000570296 XRCC5P13010 732 aaKnown RBP22.81■■□□□ 1.24
CLK3-227ENST00000570296 BEND3Q5T5X7 828 aa22.81■■□□□ 1.24
CLK3-227ENST00000570296 TRMT44Q8IYL2 757 aaKnown RBP22.81■■□□□ 1.24
CLK3-227ENST00000570296 LRRFIP2Q9Y608 721 aaKnown RBP22.81■■□□□ 1.24
CLK3-227ENST00000570296 KIF16BQ96L93 1317 aa22.81■■□□□ 1.24
CLK3-227ENST00000570296 FRMPD3Q5JV73 1810 aa22.8■■□□□ 1.24
CLK3-227ENST00000570296 MAP3K10Q02779 954 aa22.8■■□□□ 1.24
CLK3-227ENST00000570296 WDR66Q8TBY9 1149 aa22.8■■□□□ 1.24
CLK3-227ENST00000570296 TSR2Q969E8 191 aaKnown RBP22.8■■□□□ 1.24
CLK3-227ENST00000570296 TTYH1Q9H313 450 aaPredicted RBP22.8■■□□□ 1.24
CLK3-227ENST00000570296 SMAD3P84022 425 aaKnown RBP22.79■■□□□ 1.24
CLK3-227ENST00000570296 PABPC4Q13310 644 aaKnown RBP eCLIP22.79■■□□□ 1.24
CLK3-227ENST00000570296 LHX8Q68G74 356 aa22.79■■□□□ 1.24
CLK3-227ENST00000570296 ZFPM1Q8IX07 1006 aa22.79■■□□□ 1.24
CLK3-227ENST00000570296 USP40Q9NVE5 1235 aa22.79■■□□□ 1.24
CLK3-227ENST00000570296 PRKAG2Q9UGJ0 569 aa22.79■■□□□ 1.24
CLK3-227ENST00000570296 CYP2B6P20813 491 aa22.78■■□□□ 1.24
CLK3-227ENST00000570296 SOCS4Q8WXH5 440 aa22.78■■□□□ 1.24
CLK3-227ENST00000570296 ENTPD3O75355 529 aa22.77■■□□□ 1.24
CLK3-227ENST00000570296 CACNB2Q08289 660 aaPredicted RBP22.77■■□□□ 1.24
CLK3-227ENST00000570296 DIXDC1Q155Q3 683 aa22.77■■□□□ 1.24
CLK3-227ENST00000570296 METTL24Q5JXM2 366 aa22.77■■□□□ 1.24
CLK3-227ENST00000570296 VGLL2Q8N8G2 317 aa22.77■■□□□ 1.24
CLK3-227ENST00000570296 NUDT12Q9BQG2 462 aa22.77■■□□□ 1.24
CLK3-227ENST00000570296 MORF4L1Q9UBU8 362 aa22.77■■□□□ 1.24
CLK3-227ENST00000570296 TMEM265A0A087WTH1 108 aa22.76■■□□□ 1.23
CLK3-227ENST00000570296 PDE8BO95263 885 aa22.76■■□□□ 1.23
CLK3-227ENST00000570296 ZKSCAN1P17029 563 aaPredicted RBP22.76■■□□□ 1.23
CLK3-227ENST00000570296 HOXD11P31277 338 aaPredicted RBP22.76■■□□□ 1.23
CLK3-227ENST00000570296 SHHQ15465 462 aa22.76■■□□□ 1.23
CLK3-227ENST00000570296 IDI2Q9BXS1 227 aa22.76■■□□□ 1.23
CLK3-227ENST00000570296 ZEB1P37275 1124 aaPredicted RBP22.75■■□□□ 1.23
CLK3-227ENST00000570296 RGS3P49796 1198 aa22.75■■□□□ 1.23
CLK3-227ENST00000570296 C9orf78Q9NZ63 289 aaPredicted RBP22.75■■□□□ 1.23
CLK3-227ENST00000570296 SENP6Q9GZR1 1112 aaPredicted RBP22.74■■□□□ 1.23
CLK3-227ENST00000570296 ASCC2Q9H1I8 757 aaPredicted RBP22.74■■□□□ 1.23
CLK3-227ENST00000570296 F6X3S4 739 aa22.73■■□□□ 1.23
CLK3-227ENST00000570296 CCND3P30281 292 aaPredicted RBP22.73■■□□□ 1.23
CLK3-227ENST00000570296 C9orf50Q5SZB4 431 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms