RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PA2G4Q9UQ80 394 aaKnown RBP12.35□□□□□ -0.43
CLK3-226ENST00000569406 CPDO75976 1380 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 TOGARAM1Q9Y4F4 1720 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 SASH1O94885 1247 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 FMNL1O95466 1100 aaPredicted RBP12.35□□□□□ -0.43
CLK3-226ENST00000569406 MAP4K4O95819 1239 aaPredicted RBP12.35□□□□□ -0.43
CLK3-226ENST00000569406 EZRP15311 586 aaKnown RBP12.35□□□□□ -0.43
CLK3-226ENST00000569406 CUL4AQ13619 759 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 ANO6Q4KMQ2 910 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 SUCLG2Q96I99 432 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 FMNL2Q96PY5 1086 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 TADA3O75528 432 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 CAVIN2O95810 425 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 INF2Q27J81 1249 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 CCDC93Q567U6 631 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 LSG1Q9H089 658 aaKnown RBP12.34□□□□□ -0.43
CLK3-226ENST00000569406 DDX21Q9NR30 783 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-226ENST00000569406 EFCAB8A8MWE9 144 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 HSPA4P34932 840 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 C1orf141Q5JVX7 400 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 EPHA10Q5JZY3 1008 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 YIPF3Q9GZM5 350 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 NAT1P18440 290 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 TYRO3Q06418 890 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 SPATA21Q7Z572 469 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 TBC1D5Q92609 795 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 ZNF496Q96IT1 587 aaPredicted RBP12.34□□□□□ -0.43
CLK3-226ENST00000569406 ZSWIM4Q9H7M6 989 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 TCHHQ07283 1943 aa12.34□□□□□ -0.43
CLK3-226ENST00000569406 SPATA31A3Q5VYP0 1347 aa12.33□□□□□ -0.43
CLK3-226ENST00000569406 GOLGA6L4A6NEF3 574 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 NEMFO60524 1076 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 ALDH1L1O75891 902 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 SSBP05455 408 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLK3-226ENST00000569406 CD151P48509 253 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 DDR1Q08345 913 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 SCLT1Q96NL6 688 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 KCPQ6ZWJ8 1503 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 ARMC9Q7Z3E5 817 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.33□□□□□ -0.44
CLK3-226ENST00000569406 PLA2G4DQ86XP0 818 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 RASEFQ8IZ41 740 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 PLEKHG4BQ96PX9 1271 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 TBC1D2BQ9UPU7 963 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 CDR1P51861 262 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 CHRNA2Q15822 529 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 LMBR1Q8WVP7 490 aa12.33□□□□□ -0.44
CLK3-226ENST00000569406 KIAA0754O94854 1291 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 IMPDH2P12268 514 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 CCDC178Q5BJE1 867 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 RRP12Q5JTH9 1297 aaKnown RBP12.32□□□□□ -0.44
CLK3-226ENST00000569406 GPR161Q8N6U8 529 aaKnown RBP12.32□□□□□ -0.44
CLK3-226ENST00000569406 TTC14Q96N46 770 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLK3-226ENST00000569406 GOLGA6L19H0YKK7 550 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 SCNN1BP51168 640 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 ZCWPW1Q9H0M4 648 aa12.32□□□□□ -0.44
CLK3-226ENST00000569406 MEX3CQ5U5Q3 659 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 LINS1Q8NG48 757 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 PPP1R13BQ96KQ4 1090 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 CCDC114Q96M63 670 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 TLR7Q9NYK1 1049 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 WDR33Q9C0J8 1336 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 MAP3K11Q16584 847 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 HYPKQ9NX55 129 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 NEURL1BA8MQ27 555 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 RTN3O95197 1032 aaPredicted RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 MYL1P05976 194 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 MAGEA10P43363 369 aaPredicted RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 CASP7P55210 303 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 CCDC15Q0P6D6 951 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 HDXQ7Z353 690 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 DDX54Q8TDD1 881 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 MTRQ99707 1265 aa12.31□□□□□ -0.44
CLK3-226ENST00000569406 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 RANBP17Q9H2T7 1088 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 DDX20Q9UHI6 824 aaKnown RBP12.31□□□□□ -0.44
CLK3-226ENST00000569406 GRM8O00222 908 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 ZSCAN9O15535 394 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 RFX5P48382 616 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 PIP4K2AP48426 406 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 CEP112Q8N8E3 955 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 PHC3Q8NDX5 983 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 SAMM50Q9Y512 469 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 VPS37CA5D8V6 355 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 ZNF165P49910 485 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 ZBED6P86452 979 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 EAF2Q96CJ1 260 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 TRIM4Q9C037 500 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 IQCGQ9H095 443 aaKnown RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 SUGCTQ9HAC7 445 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 EPB41L2O43491 1005 aaKnown RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 CCZ1BP86790 482 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 CCZ1P86791 482 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 CAPRIN2Q6IMN6 1127 aaKnown RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 GET4Q7L5D6 327 aaPredicted RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 KLHDC4Q8TBB5 520 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 RSRC1Q96IZ7 334 aaKnown RBP12.3□□□□□ -0.44
CLK3-226ENST00000569406 LZTS2Q9BRK4 669 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms