RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CDC37L1Q7L3B6 337 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 MISP3Q96FF7 219 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 WDR89Q96FK6 387 aaPredicted RBP5.35□□□□□ -1.55
VPS35-207ENST00000568191 KRTAP4-12Q9BQ66 201 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 DISC1Q9NRI5 854 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 C1GALT1Q9NS00 363 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 CCDC39Q9UFE4 941 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 CYP8B1Q9UNU6 501 aa5.35□□□□□ -1.55
VPS35-207ENST00000568191 TRIM37O94972 964 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 HCLS1P14317 486 aaPredicted RBP5.34□□□□□ -1.55
VPS35-207ENST00000568191 ITGAEP38570 1179 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 ERVK-24P63145 666 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 TTLL4Q14679 1199 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 MSMPQ1L6U9 139 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 PDZD3Q86UT5 571 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 KCT2Q8NC54 265 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 RNF214Q8ND24 703 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 FLCNQ8NFG4 579 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 ANKRD24Q8TF21 1146 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 GATA6Q92908 595 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 C12orf49Q9H741 205 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 SLC5A6Q9Y289 635 aa5.34□□□□□ -1.55
VPS35-207ENST00000568191 FAM87AP0C7U9 286 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 TAL1P17542 331 aaPredicted RBP5.33□□□□□ -1.56
VPS35-207ENST00000568191 EIF4BP23588 611 aaKnown RBP5.33□□□□□ -1.56
VPS35-207ENST00000568191 COL19A1Q14993 1142 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 ZC3H12AQ5D1E8 599 aaKnown RBP5.33□□□□□ -1.56
VPS35-207ENST00000568191 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 SEZ6L2Q6UXD5 910 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 AEBP1Q8IUX7 1158 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 C3orf58Q8NDZ4 430 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 GPBAR1Q8TDU6 330 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 ELMO3Q96BJ8 720 aa5.33□□□□□ -1.56
VPS35-207ENST00000568191 TTF2Q9UNY4 1162 aaKnown RBP5.33□□□□□ -1.56
VPS35-207ENST00000568191 DYNC1LI2O43237 492 aaPredicted RBP5.32□□□□□ -1.56
VPS35-207ENST00000568191 PRPF40AO75400 957 aaKnown RBP5.32□□□□□ -1.56
VPS35-207ENST00000568191 USP17L7P0C7H9 530 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 ZNF252P-AS1Q0IIN9 211 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 CDK5R2Q13319 367 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 EAPPQ56P03 285 aaPredicted RBP5.32□□□□□ -1.56
VPS35-207ENST00000568191 SV2BQ7L1I2 683 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 NETO1Q8TDF5 533 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 OSBPL7Q9BZF2 842 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 ZC3H7BQ9UGR2 993 aaKnown RBP5.32□□□□□ -1.56
VPS35-207ENST00000568191 GTF2IRD1Q9UHL9 959 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 PCDHA4Q9UN74 947 aa5.32□□□□□ -1.56
VPS35-207ENST00000568191 FANCGO15287 622 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 P4HBP07237 508 aaKnown RBP5.31□□□□□ -1.56
VPS35-207ENST00000568191 GNA15P30679 374 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 HDXQ7Z353 690 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 SHISA5Q8N114 240 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 MKNK2Q9HBH9 465 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 WWC3Q9ULE0 1092 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 PCDHGC5Q9Y5F6 944 aa5.31□□□□□ -1.56
VPS35-207ENST00000568191 TMEM265A0A087WTH1 108 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 BIN1O00499 593 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 ENC1O14682 589 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 ADAMTS4O75173 837 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 FBXO24O75426 580 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 RLBP1P12271 317 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 BMP6P22004 513 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 PCNX4Q63HM2 1172 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 SND1Q7KZF4 910 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS35-207ENST00000568191 ABI1Q8IZP0 508 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 ZNF507Q8TCN5 953 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 STK35Q8TDR2 534 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 ISL2Q96A47 359 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 BCL11AQ9H165 835 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 VAV3Q9UKW4 847 aa5.3□□□□□ -1.56
VPS35-207ENST00000568191 PLCL1Q15111 1095 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 CCDC85BQ15834 202 aaPredicted RBP5.29□□□□□ -1.56
VPS35-207ENST00000568191 IFI16Q16666 785 aaKnown RBP5.29□□□□□ -1.56
VPS35-207ENST00000568191 ASIC4Q96FT7 647 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 DUSP23Q9BVJ7 150 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 ADGRE2Q9UHX3 823 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 RNF114Q9Y508 228 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 CSADQ9Y600 493 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 AK5Q9Y6K8 562 aa5.29□□□□□ -1.56
VPS35-207ENST00000568191 ANKRD33BA6NCL7 494 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 GNAT3A8MTJ3 354 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 DCDC2CA8MYV0 355 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 JUNBP17275 347 aaPredicted RBP5.28□□□□□ -1.56
VPS35-207ENST00000568191 RPS26P62854 115 aaKnown RBP5.28□□□□□ -1.56
VPS35-207ENST00000568191 XPCQ01831 940 aaPredicted RBP5.28□□□□□ -1.56
VPS35-207ENST00000568191 PPM1JQ5JR12 505 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 TTBK2Q6IQ55 1244 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 C12orf40Q86WS4 652 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 TOP6BLQ8N6T0 577 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 GRIN3AQ8TCU5 1115 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 HRASLS5Q96KN8 279 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 SETDB2Q96T68 719 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 PRDM10Q9NQV6 1147 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 CACNA2D2Q9NY47 1150 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 SNCAIPQ9Y6H5 919 aa5.28□□□□□ -1.56
VPS35-207ENST00000568191 PAGE1O75459 146 aa5.27□□□□□ -1.57
VPS35-207ENST00000568191 NEFMP07197 916 aa5.27□□□□□ -1.57
VPS35-207ENST00000568191 ETF1P62495 437 aaKnown RBP5.27□□□□□ -1.57
VPS35-207ENST00000568191 PRKCQQ04759 706 aa5.27□□□□□ -1.57
VPS35-207ENST00000568191 PSMD2Q13200 908 aa5.27□□□□□ -1.57
VPS35-207ENST00000568191 BCL7CQ8WUZ0 217 aaPredicted RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms