RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 SQSTM1Q13501 440 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 GRM2Q14416 872 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 MTERF2Q49AM1 385 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 PCNX4Q63HM2 1172 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 INTS5Q6P9B9 1019 aaKnown RBP4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 FBXL19Q6PCT2 694 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 KIAA0907Q7Z7F0 614 aaPredicted RBP4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 CMTR1Q8N1G2 835 aaKnown RBP4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 TMEM74Q96NL1 305 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 RPS6KC1Q96S38 1066 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 NOC4LQ9BVI4 516 aaKnown RBP4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 ZFYVE28Q9HCC9 887 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 DNAJB12Q9NXW2 375 aaKnown RBP4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 AKAP2Q9Y2D5 859 aa4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 THRAP3Q9Y2W1 955 aaKnown RBP4.42□□□□□ -1.7
HERPUD1-211ENST00000566550 UBAP1LF5GYI3 381 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 TLR3O15455 904 aaKnown RBP4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 PDPK1O15530 556 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 ASMTLO95671 621 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 HIRAP54198 1017 aaPredicted RBP4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 RALBP1Q15311 655 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 DDR2Q16832 855 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 TNNI3KQ59H18 835 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 CT47A1Q5JQC4 288 aaPredicted RBP4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 JAMLQ86YT9 394 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 FAM169BQ8N8A8 192 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 GOLM1Q8NBJ4 401 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 NKD1Q969G9 470 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 MEGF10Q96KG7 1140 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 RSRP1Q9BUV0 290 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 FAM126AQ9BYI3 521 aaPredicted RBP4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 EHD4Q9H223 541 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 AKTIPQ9H8T0 292 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 TMEM260Q9NX78 707 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 ACTR10Q9NZ32 417 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 TMEM63CQ9P1W3 806 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 CNTN3Q9P232 1028 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 BCS1LQ9Y276 419 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 TLR6Q9Y2C9 796 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 SUPT16HQ9Y5B9 1047 aaKnown RBP4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 CD2APQ9Y5K6 639 aa4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 OAS3Q9Y6K5 1087 aaKnown RBP4.41□□□□□ -1.7
HERPUD1-211ENST00000566550 EREGO14944 169 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 SH3BP5O60239 455 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 PF4P02776 101 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 MCM4P33991 863 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 IDH3AP50213 366 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 EIF6P56537 245 aaKnown RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 TRIP4Q15650 581 aaPredicted RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 SEZ6Q53EL9 994 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 C2orf27AQ580R0 203 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 BRDTQ58F21 947 aaPredicted RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 PPP4R4Q6NUP7 873 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 TPTE2Q6XPS3 522 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 TSHZ1Q6ZSZ6 1077 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 LRP10Q7Z4F1 713 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 FAM35AQ86V20 835 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 EVI5LQ96CN4 794 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 SHDQ96IW2 340 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 HSH2DQ96JZ2 352 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 FERD3LQ96RJ6 166 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 MPHOSPH6Q99547 160 aaKnown RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 CCDC113Q9H0I3 377 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 MRPL18Q9H0U6 180 aaKnown RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 RBSNQ9H1K0 784 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 TMX1Q9H3N1 280 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 ELP3Q9H9T3 547 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 FNDC3AQ9Y2H6 1198 aaKnown RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 PTCH2Q9Y6C5 1203 aa4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 ARID1BQ8NFD5 2236 aaPredicted RBP4.4□□□□□ -1.71
HERPUD1-211ENST00000566550 KIAA1324LA8MWY0 1029 aaPredicted RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 PLIN1O60240 522 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 DIAPH1O60610 1272 aaKnown RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 IGLV1-40P01703 118 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 CENPBP07199 599 aaPredicted RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 PAX3P23760 479 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 CRKP46108 304 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 TYRO3Q06418 890 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 OS9Q13438 667 aaPredicted RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 CCINQ13939 588 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 RASGRF1Q13972 1273 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 COL9A2Q14055 689 aaPredicted RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 TCEA2Q15560 299 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 PPP2R5EQ16537 467 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 MAP9Q49MG5 647 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 PRPF40BQ6NWY9 871 aaKnown RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 ELMSAN1Q6PJG2 1045 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 POTEAQ6S8J7 498 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 DZIP1LQ8IYY4 767 aaKnown RBP4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 C7orf43Q8WVR3 580 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 SUSD3Q96L08 255 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 C8orf48Q96LL4 319 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 CRBNQ96SW2 442 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 NT5C1AQ9BXI3 368 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 LATS2Q9NRM7 1088 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 PPP4R2Q9NY27 417 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 FRRS1LQ9P0K9 344 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 ATP8A1Q9Y2Q0 1164 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 RAXQ9Y2V3 346 aa4.39□□□□□ -1.71
HERPUD1-211ENST00000566550 MSRB2Q9Y3D2 182 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms