RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZAP70P43403 619 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 HDLBPQ00341 1268 aaKnown RBP20.99■□□□□ 0.95
CLN3-217ENST00000565354 TNFAIP1Q13829 316 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 ARHGEF6Q15052 776 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 SLC9C1Q4G0N8 1177 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 B4GALNT3Q6L9W6 998 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 NBPF11Q86T75 865 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 RAI14Q9P0K7 980 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 LRP2BPQ9P2M1 347 aa20.99■□□□□ 0.95
CLN3-217ENST00000565354 TBC1D9Q6ZT07 1266 aa20.98■□□□□ 0.95
CLN3-217ENST00000565354 SLF2Q8IX21 1173 aa20.98■□□□□ 0.95
CLN3-217ENST00000565354 COLQQ9Y215 455 aaPredicted RBP20.98■□□□□ 0.95
CLN3-217ENST00000565354 PTCH2Q9Y6C5 1203 aa20.98■□□□□ 0.95
CLN3-217ENST00000565354 TAF1CQ15572 869 aaPredicted RBP20.97■□□□□ 0.95
CLN3-217ENST00000565354 SPDYE2Q495Y8 402 aa20.97■□□□□ 0.95
CLN3-217ENST00000565354 BRI3BPQ8WY22 251 aa20.97■□□□□ 0.95
CLN3-217ENST00000565354 DNAJC2Q99543 621 aaKnown RBP20.97■□□□□ 0.95
CLN3-217ENST00000565354 ZFYVE28Q9HCC9 887 aa20.97■□□□□ 0.95
CLN3-217ENST00000565354 SZT2Q5T011 3432 aa20.97■□□□□ 0.95
CLN3-217ENST00000565354 GSTO1P78417 241 aa20.96■□□□□ 0.95
CLN3-217ENST00000565354 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.96■□□□□ 0.95
CLN3-217ENST00000565354 SMC5Q8IY18 1101 aa20.96■□□□□ 0.95
CLN3-217ENST00000565354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.96■□□□□ 0.95
CLN3-217ENST00000565354 BOLA2Q9H3K6 86 aa20.96■□□□□ 0.95
CLN3-217ENST00000565354 ECHDC1Q9NTX5 307 aa20.96■□□□□ 0.95
CLN3-217ENST00000565354 ZNF70Q9UC06 446 aaPredicted RBP20.96■□□□□ 0.95
CLN3-217ENST00000565354 CCL15-CCL14A0A0B4J2E2 113 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 CYP2E1P05181 493 aaPredicted RBP20.95■□□□□ 0.94
CLN3-217ENST00000565354 ATP5JP18859 108 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 GTF2A2P52657 109 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 TTF1Q15361 905 aaPredicted RBP20.95■□□□□ 0.94
CLN3-217ENST00000565354 DIXDC1Q155Q3 683 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 CCL15Q16663 113 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 SLC4A8Q2Y0W8 1093 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 HHIPL2Q6UWX4 724 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 CNKSR2Q8WXI2 1034 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 TEPSINQ96N21 525 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 MRIQ9BWK5 157 aa20.95■□□□□ 0.94
CLN3-217ENST00000565354 LDHCP07864 332 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 VGLL4Q14135 290 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 CDAN1Q8IWY9 1227 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 LNPKQ9C0E8 428 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 TDRD3Q9H7E2 651 aaKnown RBP20.94■□□□□ 0.94
CLN3-217ENST00000565354 TMOD2Q9NZR1 351 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 NDUFB9Q9Y6M9 179 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 ZSWIM8A7E2V4 1837 aa20.94■□□□□ 0.94
CLN3-217ENST00000565354 IDH1O75874 414 aaKnown RBP20.93■□□□□ 0.94
CLN3-217ENST00000565354 MAP3K9P80192 1104 aa20.93■□□□□ 0.94
CLN3-217ENST00000565354 MECOMQ03112 1051 aa20.93■□□□□ 0.94
CLN3-217ENST00000565354 FAM43AQ8N2R8 423 aa20.93■□□□□ 0.94
CLN3-217ENST00000565354 ZDHHC15Q96MV8 337 aa20.93■□□□□ 0.94
CLN3-217ENST00000565354 NOL10Q9BSC4 688 aaKnown RBP20.93■□□□□ 0.94
CLN3-217ENST00000565354 GOLIM4O00461 696 aa20.92■□□□□ 0.94
CLN3-217ENST00000565354 ERC2O15083 957 aa20.92■□□□□ 0.94
CLN3-217ENST00000565354 NAA16Q6N069 864 aaPredicted RBP20.92■□□□□ 0.94
CLN3-217ENST00000565354 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLN3-217ENST00000565354 TMEM39BQ9GZU3 492 aa20.92■□□□□ 0.94
CLN3-217ENST00000565354 PIH1D3Q9NQM4 214 aaKnown RBP20.92■□□□□ 0.94
CLN3-217ENST00000565354 DAGLAQ9Y4D2 1042 aa20.92■□□□□ 0.94
CLN3-217ENST00000565354 CSADQ9Y600 493 aa20.92■□□□□ 0.94
CLN3-217ENST00000565354 TTC41PQ6P2S7 1318 aa20.92■□□□□ 0.94
CLN3-217ENST00000565354 TCP10L2B9ZVM9 353 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 MX1P20591 662 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 MAP3K12Q12852 859 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 CHD1LQ86WJ1 897 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 NSUN4Q96CB9 384 aaKnown RBP20.91■□□□□ 0.94
CLN3-217ENST00000565354 OTUD5Q96G74 571 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 ANTXR1Q9H6X2 564 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 PAG1Q9NWQ8 432 aa20.91■□□□□ 0.94
CLN3-217ENST00000565354 RANBP2P49792 3224 aaKnown RBP20.91■□□□□ 0.94
CLN3-217ENST00000565354 MYH2Q9UKX2 1941 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 MAST2Q6P0Q8 1798 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 MROH7-TTC4A0A0A0MT08 1334 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 H0YGN5 161 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 IGSF3O75054 1194 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 WDHD1O75717 1129 aaPredicted RBP20.9■□□□□ 0.94
CLN3-217ENST00000565354 MYCP01106 439 aaPredicted RBP20.9■□□□□ 0.94
CLN3-217ENST00000565354 TNNI2P48788 182 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 NUCB1Q02818 461 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 TSHZ3Q63HK5 1081 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 OTUD7AQ8TE49 926 aaPredicted RBP20.9■□□□□ 0.94
CLN3-217ENST00000565354 HAUS7Q99871 368 aa20.9■□□□□ 0.94
CLN3-217ENST00000565354 TLR2O60603 784 aa20.89■□□□□ 0.93
CLN3-217ENST00000565354 APOBEC3HQ6NTF7 200 aaKnown RBP20.89■□□□□ 0.93
CLN3-217ENST00000565354 SH3TC2Q8TF17 1288 aa20.89■□□□□ 0.93
CLN3-217ENST00000565354 ARHGAP39Q9C0H5 1083 aa20.89■□□□□ 0.93
CLN3-217ENST00000565354 SPDYE5A6NIY4 337 aa20.88■□□□□ 0.93
CLN3-217ENST00000565354 GLRX3O76003 335 aaKnown RBP20.88■□□□□ 0.93
CLN3-217ENST00000565354 BTDP43251 543 aa20.88■□□□□ 0.93
CLN3-217ENST00000565354 LACTBP83111 547 aaPredicted RBP20.88■□□□□ 0.93
CLN3-217ENST00000565354 KIF22Q14807 665 aa20.88■□□□□ 0.93
CLN3-217ENST00000565354 ZCCHC17Q9NP64 241 aaKnown RBP20.88■□□□□ 0.93
CLN3-217ENST00000565354 USP40Q9NVE5 1235 aa20.88■□□□□ 0.93
CLN3-217ENST00000565354 GAKO14976 1311 aa20.87■□□□□ 0.93
CLN3-217ENST00000565354 GNRH1P01148 92 aa20.87■□□□□ 0.93
CLN3-217ENST00000565354 CETPP11597 493 aa20.87■□□□□ 0.93
CLN3-217ENST00000565354 CYP7A1P22680 504 aa20.87■□□□□ 0.93
CLN3-217ENST00000565354 MAGEB6Q8N7X4 407 aa20.87■□□□□ 0.93
CLN3-217ENST00000565354 EDC3Q96F86 508 aaKnown RBP20.87■□□□□ 0.93
CLN3-217ENST00000565354 FAM163AQ96GL9 167 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms