RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 UBE3CQ15386 1083 aa20.23■□□□□ 0.83
CLK3-207ENST00000562389 CYP4F22Q6NT55 531 aa20.23■□□□□ 0.83
CLK3-207ENST00000562389 PAXIP1Q6ZW49 1069 aaPredicted RBP20.23■□□□□ 0.83
CLK3-207ENST00000562389 ZFPM1Q8IX07 1006 aa20.23■□□□□ 0.83
CLK3-207ENST00000562389 CAPNS2Q96L46 248 aa20.23■□□□□ 0.83
CLK3-207ENST00000562389 RIOK1Q9BRS2 568 aaKnown RBP20.23■□□□□ 0.83
CLK3-207ENST00000562389 FZD1Q9UP38 647 aa20.23■□□□□ 0.83
CLK3-207ENST00000562389 WDR33Q9C0J8 1336 aaKnown RBP20.23■□□□□ 0.83
CLK3-207ENST00000562389 ATRNL1Q5VV63 1379 aa20.22■□□□□ 0.83
CLK3-207ENST00000562389 UNCXA6NJT0 531 aa20.22■□□□□ 0.83
CLK3-207ENST00000562389 USP2O75604 605 aaPredicted RBP20.22■□□□□ 0.83
CLK3-207ENST00000562389 NEFLP07196 543 aa20.22■□□□□ 0.83
CLK3-207ENST00000562389 IREB2P48200 963 aaKnown RBP20.22■□□□□ 0.83
CLK3-207ENST00000562389 LDLRAD1Q5T700 205 aa20.22■□□□□ 0.83
CLK3-207ENST00000562389 JMYQ8N9B5 988 aa20.22■□□□□ 0.83
CLK3-207ENST00000562389 OSBPL5Q9H0X9 879 aaPredicted RBP20.22■□□□□ 0.83
CLK3-207ENST00000562389 MAGEB6P1A0A0J9YX57 407 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 DCAF15Q66K64 600 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 SH3BP5LQ7L8J4 393 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 PLEKHM2Q8IWE5 1019 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 OSBPL3Q9H4L5 887 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 MYH1P12882 1939 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 DDX60LQ5H9U9 1706 aaKnown RBP20.21■□□□□ 0.83
CLK3-207ENST00000562389 FLT1P17948 1338 aa20.21■□□□□ 0.83
CLK3-207ENST00000562389 NAV1Q8NEY1 1877 aa20.2■□□□□ 0.82
CLK3-207ENST00000562389 DDTLA6NHG4 134 aaPredicted RBP20.2■□□□□ 0.82
CLK3-207ENST00000562389 SLC10A3P09131 477 aa20.2■□□□□ 0.82
CLK3-207ENST00000562389 ZNF157P51786 506 aaPredicted RBP20.2■□□□□ 0.82
CLK3-207ENST00000562389 TGFBRAP1Q8WUH2 860 aa20.2■□□□□ 0.82
CLK3-207ENST00000562389 CCDC102AQ96A19 550 aa20.2■□□□□ 0.82
CLK3-207ENST00000562389 CSRNP1Q96S65 589 aa20.2■□□□□ 0.82
CLK3-207ENST00000562389 SIPA1L1O43166 1804 aa20.19■□□□□ 0.82
CLK3-207ENST00000562389 FAM155AB1AL88 458 aaPredicted RBP20.19■□□□□ 0.82
CLK3-207ENST00000562389 ZFYP08048 801 aaPredicted RBP20.19■□□□□ 0.82
CLK3-207ENST00000562389 LRRFIP1Q32MZ4 808 aaKnown RBP20.19■□□□□ 0.82
CLK3-207ENST00000562389 RASAL3Q86YV0 1011 aa20.19■□□□□ 0.82
CLK3-207ENST00000562389 ZSCAN29Q8IWY8 852 aaPredicted RBP20.19■□□□□ 0.82
CLK3-207ENST00000562389 ANKRD13AQ8IZ07 590 aa20.19■□□□□ 0.82
CLK3-207ENST00000562389 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.19■□□□□ 0.82
CLK3-207ENST00000562389 LAMB1P07942 1786 aa20.18■□□□□ 0.82
CLK3-207ENST00000562389 CHGBP05060 677 aa20.18■□□□□ 0.82
CLK3-207ENST00000562389 SLFNL1Q499Z3 407 aa20.18■□□□□ 0.82
CLK3-207ENST00000562389 MAPKAPK5Q8IW41 473 aa20.18■□□□□ 0.82
CLK3-207ENST00000562389 EVI5LQ96CN4 794 aa20.18■□□□□ 0.82
CLK3-207ENST00000562389 ZNF341Q9BYN7 854 aa20.18■□□□□ 0.82
CLK3-207ENST00000562389 DHX36Q9H2U1 1008 aaKnown RBP20.18■□□□□ 0.82
CLK3-207ENST00000562389 RNF113AO15541 343 aaKnown RBP20.17■□□□□ 0.82
CLK3-207ENST00000562389 PDE4AP27815 886 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 USP5P45974 858 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 MAP3K10Q02779 954 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 NOGQ13253 232 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 GRM1Q13255 1194 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 MIGA2Q7L4E1 593 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 LCORLQ8N3X6 602 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 FSD1Q9BTV5 496 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 CRNKL1Q9BZJ0 848 aaKnown RBP20.17■□□□□ 0.82
CLK3-207ENST00000562389 CEP350Q5VT06 3117 aa20.17■□□□□ 0.82
CLK3-207ENST00000562389 MBD4O95243 580 aa20.16■□□□□ 0.82
CLK3-207ENST00000562389 MAP2K2P36507 400 aa20.16■□□□□ 0.82
CLK3-207ENST00000562389 MAP3K9P80192 1104 aa20.16■□□□□ 0.82
CLK3-207ENST00000562389 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.16■□□□□ 0.82
CLK3-207ENST00000562389 CENPQQ7L2Z9 268 aaPredicted RBP20.16■□□□□ 0.82
CLK3-207ENST00000562389 APPBP2Q92624 585 aa20.16■□□□□ 0.82
CLK3-207ENST00000562389 WRNIP1Q96S55 665 aa20.16■□□□□ 0.82
CLK3-207ENST00000562389 ZNF112Q9UJU3 913 aa20.16■□□□□ 0.82
CLK3-207ENST00000562389 TBC1D12O60347 775 aa20.15■□□□□ 0.82
CLK3-207ENST00000562389 AOC2O75106 756 aa20.15■□□□□ 0.82
CLK3-207ENST00000562389 TICAM2Q86XR7 235 aa20.15■□□□□ 0.82
CLK3-207ENST00000562389 AIDAQ96BJ3 306 aa20.15■□□□□ 0.82
CLK3-207ENST00000562389 CLMNQ96JQ2 1002 aa20.15■□□□□ 0.82
CLK3-207ENST00000562389 PUS7LQ9H0K6 701 aaKnown RBP20.15■□□□□ 0.82
CLK3-207ENST00000562389 ARMT1Q9H993 441 aa20.15■□□□□ 0.82
CLK3-207ENST00000562389 VGLL4Q14135 290 aa20.14■□□□□ 0.81
CLK3-207ENST00000562389 SLC10A4Q96EP9 437 aa20.14■□□□□ 0.81
CLK3-207ENST00000562389 PI4KBQ9UBF8 816 aa20.14■□□□□ 0.81
CLK3-207ENST00000562389 CSADQ9Y600 493 aa20.14■□□□□ 0.81
CLK3-207ENST00000562389 DOCK1Q14185 1865 aa20.13■□□□□ 0.81
CLK3-207ENST00000562389 OSBP2Q969R2 916 aa20.13■□□□□ 0.81
CLK3-207ENST00000562389 HERC5Q9UII4 1024 aaKnown RBP20.13■□□□□ 0.81
CLK3-207ENST00000562389 PALD1Q9ULE6 856 aa20.13■□□□□ 0.81
CLK3-207ENST00000562389 BAZ2AQ9UIF9 1905 aaKnown RBP20.12■□□□□ 0.81
CLK3-207ENST00000562389 PHF20L1A8MW92 1017 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 TRIM6-TRIM34B2RNG4 842 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 HLA-DOAP06340 250 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 ZBTB48P10074 688 aaPredicted RBP20.12■□□□□ 0.81
CLK3-207ENST00000562389 ZMYM1Q5SVZ6 1142 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 NOL9Q5SY16 702 aaKnown RBP20.12■□□□□ 0.81
CLK3-207ENST00000562389 ERICH6BQ5W0A0 696 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 SPRYD7Q5W111 196 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 METTL16Q86W50 562 aaKnown RBP20.12■□□□□ 0.81
CLK3-207ENST00000562389 SDR42E1Q8WUS8 393 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 WNK4Q96J92 1243 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 ELP3Q9H9T3 547 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 DCP1AQ9NPI6 582 aaPredicted RBP20.12■□□□□ 0.81
CLK3-207ENST00000562389 SAP30BPQ9UHR5 308 aaKnown RBP20.12■□□□□ 0.81
CLK3-207ENST00000562389 SNCAIPQ9Y6H5 919 aa20.12■□□□□ 0.81
CLK3-207ENST00000562389 ATAD5Q96QE3 1844 aa20.11■□□□□ 0.81
CLK3-207ENST00000562389 INPP5BP32019 993 aa20.11■□□□□ 0.81
CLK3-207ENST00000562389 MAP2K1Q02750 393 aaPredicted RBP20.11■□□□□ 0.81
CLK3-207ENST00000562389 ZKSCAN4Q969J2 545 aaPredicted RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms