RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 B4GALNT3Q6L9W6 998 aa16.91■□□□□ 0.3
TPM1-230ENST00000561266 CNKSR2Q8WXI2 1034 aa16.91■□□□□ 0.3
TPM1-230ENST00000561266 GCC1Q96CN9 775 aa16.91■□□□□ 0.3
TPM1-230ENST00000561266 WBP1LQ9NX94 342 aa16.91■□□□□ 0.3
TPM1-230ENST00000561266 MYH1P12882 1939 aa16.9■□□□□ 0.3
TPM1-230ENST00000561266 PPP1R12BO60237 982 aaPredicted RBP16.9■□□□□ 0.3
TPM1-230ENST00000561266 MAP3K12Q12852 859 aa16.9■□□□□ 0.3
TPM1-230ENST00000561266 SLC9C2Q5TAH2 1124 aa16.9■□□□□ 0.3
TPM1-230ENST00000561266 TEX11Q8IYF3 940 aa16.9■□□□□ 0.3
TPM1-230ENST00000561266 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.9■□□□□ 0.3
TPM1-230ENST00000561266 RIOK1Q9BRS2 568 aaKnown RBP16.9■□□□□ 0.3
TPM1-230ENST00000561266 RWDD1Q9H446 243 aaPredicted RBP16.9■□□□□ 0.3
TPM1-230ENST00000561266 ZNF532Q9HCE3 1301 aa16.9■□□□□ 0.3
TPM1-230ENST00000561266 FOXN1O15353 648 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 INPP5BP32019 993 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 MAP2K2P36507 400 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 TTF1Q15361 905 aaPredicted RBP16.89■□□□□ 0.29
TPM1-230ENST00000561266 TGFBRAP1Q8WUH2 860 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 CCDC102AQ96A19 550 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 LNPKQ9C0E8 428 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 LAMB1P07942 1786 aa16.89■□□□□ 0.29
TPM1-230ENST00000561266 FAM196BA6NMK8 535 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 ADD2P35612 726 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 IREB2P48200 963 aaKnown RBP16.88■□□□□ 0.29
TPM1-230ENST00000561266 NOGQ13253 232 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 VGLL4Q14135 290 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 SPRYD7Q5W111 196 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 MAPKAPK5Q8IW41 473 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 ZKSCAN4Q969J2 545 aaPredicted RBP16.88■□□□□ 0.29
TPM1-230ENST00000561266 CSRNP1Q96S65 589 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 OSBPL5Q9H0X9 879 aaPredicted RBP16.88■□□□□ 0.29
TPM1-230ENST00000561266 ELP3Q9H9T3 547 aa16.88■□□□□ 0.29
TPM1-230ENST00000561266 PHF20L1A8MW92 1017 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 NPM3O75607 178 aaKnown RBP16.87■□□□□ 0.29
TPM1-230ENST00000561266 MX1P20591 662 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 MAP3K9P80192 1104 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 MAP3K10Q02779 954 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 EVX2Q03828 476 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 ANKRD13AQ8IZ07 590 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 SLC10A4Q96EP9 437 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 WNK4Q96J92 1243 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 ZNF112Q9UJU3 913 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 SNCAIPQ9Y6H5 919 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 FLT1P17948 1338 aa16.87■□□□□ 0.29
TPM1-230ENST00000561266 BAZ2AQ9UIF9 1905 aaKnown RBP16.86■□□□□ 0.29
TPM1-230ENST00000561266 IGSF3O75054 1194 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 BAG3O95817 575 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 NUCB1Q02818 461 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 RRP1BQ14684 758 aaKnown RBP16.86■□□□□ 0.29
TPM1-230ENST00000561266 ZSCAN29Q8IWY8 852 aaPredicted RBP16.86■□□□□ 0.29
TPM1-230ENST00000561266 LCORLQ8N3X6 602 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 WRNIP1Q96S55 665 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 STAP2Q9UGK3 403 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 SAP30BPQ9UHR5 308 aaKnown RBP16.86■□□□□ 0.29
TPM1-230ENST00000561266 TSKSQ9UJT2 592 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 DDX60LQ5H9U9 1706 aaKnown RBP16.86■□□□□ 0.29
TPM1-230ENST00000561266 TTC41PQ6P2S7 1318 aa16.86■□□□□ 0.29
TPM1-230ENST00000561266 PHIPQ8WWQ0 1821 aa16.85■□□□□ 0.29
TPM1-230ENST00000561266 PDE1AP54750 535 aa16.85■□□□□ 0.29
TPM1-230ENST00000561266 SLC4A8Q2Y0W8 1093 aa16.85■□□□□ 0.29
TPM1-230ENST00000561266 CHD1LQ86WJ1 897 aa16.85■□□□□ 0.29
TPM1-230ENST00000561266 NOL10Q9BSC4 688 aaKnown RBP16.85■□□□□ 0.29
TPM1-230ENST00000561266 ZNF341Q9BYN7 854 aa16.85■□□□□ 0.29
TPM1-230ENST00000561266 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.85■□□□□ 0.29
TPM1-230ENST00000561266 PALD1Q9ULE6 856 aa16.85■□□□□ 0.29
TPM1-230ENST00000561266 NAV1Q8NEY1 1877 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 MAGEB6P1A0A0J9YX57 407 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 PRKAB2O43741 272 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 PDE4AP27815 886 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 MAP2K1Q02750 393 aaPredicted RBP16.84■□□□□ 0.29
TPM1-230ENST00000561266 KBTBD3Q8NAB2 608 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 PUS7LQ9H0K6 701 aaKnown RBP16.84■□□□□ 0.29
TPM1-230ENST00000561266 DNAJC18Q9H819 358 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 ARMT1Q9H993 441 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 COL2A1P02458 1487 aaPredicted RBP16.84■□□□□ 0.29
TPM1-230ENST00000561266 ATAD5Q96QE3 1844 aa16.84■□□□□ 0.29
TPM1-230ENST00000561266 SMIM22K7EJ46 135 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 GLRX3O76003 335 aaKnown RBP16.83■□□□□ 0.28
TPM1-230ENST00000561266 PLCG2P16885 1265 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 DOCK1Q14185 1865 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 SHROOM1Q2M3G4 852 aaPredicted RBP16.83■□□□□ 0.28
TPM1-230ENST00000561266 DCAF15Q66K64 600 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 PLEKHM2Q8IWE5 1019 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 SDR42E1Q8WUS8 393 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 OPTNQ96CV9 577 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 GPATCH3Q96I76 525 aa16.83■□□□□ 0.28
TPM1-230ENST00000561266 CASP8AP2Q9UKL3 1982 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 UNCXA6NJT0 531 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 MBD4O95243 580 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 HSPA8P11142 646 aaKnown RBP16.82■□□□□ 0.28
TPM1-230ENST00000561266 JAG1P78504 1218 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 UBE3CQ15386 1083 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 CCDC84Q86UT8 332 aaPredicted RBP16.82■□□□□ 0.28
TPM1-230ENST00000561266 OSBP2Q969R2 916 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 MS4A4AQ96JQ5 239 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 RNF186Q9NXI6 227 aa16.82■□□□□ 0.28
TPM1-230ENST00000561266 SPDYE5A6NIY4 337 aa16.81■□□□□ 0.28
TPM1-230ENST00000561266 TM4SF4P48230 202 aa16.81■□□□□ 0.28
TPM1-230ENST00000561266 HOOK2Q96ED9 719 aa16.81■□□□□ 0.28
TPM1-230ENST00000561266 OTUD5Q96G74 571 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms