RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 POLR3GO15318 223 aaPredicted RBP13.01□□□□□ -0.33
CUX1-218ENST00000560541 GRIPAP1Q4V328 841 aa13.01□□□□□ -0.33
CUX1-218ENST00000560541 APOA5Q6Q788 366 aa13.01□□□□□ -0.33
CUX1-218ENST00000560541 ZMYM6O95789 1325 aa13.01□□□□□ -0.33
CUX1-218ENST00000560541 ITGA6P23229 1130 aa13.01□□□□□ -0.33
CUX1-218ENST00000560541 HELBQ8NG08 1087 aaPredicted RBP13.01□□□□□ -0.33
CUX1-218ENST00000560541 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.01□□□□□ -0.338e-7■■■□□ 15.1
CUX1-218ENST00000560541 MST1RQ04912 1400 aa13.01□□□□□ -0.33
CUX1-218ENST00000560541 LAMB4A4D0S4 1761 aa13□□□□□ -0.33
CUX1-218ENST00000560541 GUCY2CP25092 1073 aa13□□□□□ -0.33
CUX1-218ENST00000560541 CASQ1P31415 396 aa13□□□□□ -0.33
CUX1-218ENST00000560541 CYP2C19P33261 490 aa13□□□□□ -0.33
CUX1-218ENST00000560541 LONRF3Q496Y0 759 aa13□□□□□ -0.33
CUX1-218ENST00000560541 DNAJC10Q8IXB1 793 aa13□□□□□ -0.33
CUX1-218ENST00000560541 UTP14AQ9BVJ6 771 aaKnown RBP13□□□□□ -0.33
CUX1-218ENST00000560541 FANCLQ9NW38 375 aa13□□□□□ -0.33
CUX1-218ENST00000560541 WWC3Q9ULE0 1092 aa13□□□□□ -0.33
CUX1-218ENST00000560541 CPDO75976 1380 aa13□□□□□ -0.33
CUX1-218ENST00000560541 ZNF532Q9HCE3 1301 aa13□□□□□ -0.33
CUX1-218ENST00000560541 MYO1CO00159 1063 aa13□□□□□ -0.33
CUX1-218ENST00000560541 SH2B2O14492 632 aaPredicted RBP13□□□□□ -0.33
CUX1-218ENST00000560541 NRDCO43847 1150 aa13□□□□□ -0.33
CUX1-218ENST00000560541 RANBP6O60518 1105 aaKnown RBP13□□□□□ -0.33
CUX1-218ENST00000560541 ADD2P35612 726 aa13□□□□□ -0.33
CUX1-218ENST00000560541 KRBA2Q6ZNG9 492 aa13□□□□□ -0.33
CUX1-218ENST00000560541 ZNF446Q9NWS9 450 aa13□□□□□ -0.33
CUX1-218ENST00000560541 NUP188Q5SRE5 1749 aa13□□□□□ -0.33
CUX1-218ENST00000560541 ERVV-2B6SEH9 535 aa13□□□□□ -0.33
CUX1-218ENST00000560541 SNAP23O00161 211 aa13□□□□□ -0.33
CUX1-218ENST00000560541 ZBTB43O43298 467 aa13□□□□□ -0.33
CUX1-218ENST00000560541 MYL5Q02045 173 aa13□□□□□ -0.33
CUX1-218ENST00000560541 PTPAQ15257 358 aa13□□□□□ -0.33
CUX1-218ENST00000560541 HLFQ16534 295 aa13□□□□□ -0.33
CUX1-218ENST00000560541 METTL16Q86W50 562 aaKnown RBP13□□□□□ -0.33
CUX1-218ENST00000560541 FOXP4Q8IVH2 680 aaPredicted RBP13□□□□□ -0.33
CUX1-218ENST00000560541 CMTR1Q8N1G2 835 aaKnown RBP13□□□□□ -0.33
CUX1-218ENST00000560541 RNF217Q8TC41 542 aa13□□□□□ -0.33
CUX1-218ENST00000560541 SLC26A6Q9BXS9 759 aa13□□□□□ -0.33
CUX1-218ENST00000560541 GOLGA8AA7E2F4 631 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 KIF2AO00139 706 aaPredicted RBP12.99□□□□□ -0.33
CUX1-218ENST00000560541 ATP2B1P20020 1258 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 IARSP41252 1262 aaKnown RBP12.99□□□□□ -0.33
CUX1-218ENST00000560541 PHKA1P46020 1223 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 CTDSPL2Q05D32 466 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 KIF6Q6ZMV9 814 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 CNNM3Q8NE01 707 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 ASAP1Q9ULH1 1129 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 ZNF142P52746 1687 aaPredicted RBP12.99□□□□□ -0.33
CUX1-218ENST00000560541 PSDA5PKW4 1024 aaPredicted RBP12.99□□□□□ -0.33
CUX1-218ENST00000560541 GRIN1Q05586 938 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 PDE4BQ07343 736 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 ZNF827Q17R98 1081 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 TMEM67Q5HYA8 995 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 ZKSCAN3Q9BRR0 538 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 PCDHA5Q9Y5H7 936 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 RIC1Q4ADV7 1423 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 TNS3Q68CZ2 1445 aa12.99□□□□□ -0.33
CUX1-218ENST00000560541 KCPQ6ZWJ8 1503 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 FANCGO15287 622 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 TRIM29Q14134 588 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 RRP12Q5JTH9 1297 aaKnown RBP12.98□□□□□ -0.33
CUX1-218ENST00000560541 TICAM2Q86XR7 235 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 MAP3K14Q99558 947 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 KCND1Q9NSA2 647 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 TUBE1Q9UJT0 475 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 HPSEQ9Y251 543 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 JRKLQ9Y4A0 524 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 RIPOR2Q9Y4F9 1068 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 PKD1L3Q7Z443 1732 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 KAT6BQ8WYB5 2073 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 SPATA31A3Q5VYP0 1347 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 UBN2Q6ZU65 1347 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 IKBKBO14920 756 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 PCCAP05165 728 aaPredicted RBP12.98□□□□□ -0.33
CUX1-218ENST00000560541 GUCY1A2P33402 732 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 ARHGAP29Q52LW3 1261 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 CPLX2Q6PUV4 134 aaKnown RBP12.98□□□□□ -0.33
CUX1-218ENST00000560541 PDILTQ8N807 584 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 JMYQ8N9B5 988 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 ZBTB38Q8NAP3 1195 aaPredicted RBP12.98□□□□□ -0.33
CUX1-218ENST00000560541 L2HGDHQ9H9P8 463 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 KCNH3Q9ULD8 1083 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 KCNJ14Q9UNX9 436 aa12.98□□□□□ -0.33
CUX1-218ENST00000560541 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.98□□□□□ -0.338e-7■■□□□ 12.7
CUX1-218ENST00000560541 CDKL5O76039 1030 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 TOP1P11387 765 aaKnown RBP12.97□□□□□ -0.33
CUX1-218ENST00000560541 BMP6P22004 513 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 TDO2P48775 406 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 OLFM4Q6UX06 510 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 TRMT44Q8IYL2 757 aaKnown RBP12.97□□□□□ -0.33
CUX1-218ENST00000560541 AIDAQ96BJ3 306 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 SPEF2Q9C093 1822 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 WDR17Q8IZU2 1322 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 BTBD18B2RXH4 712 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 URI1O94763 535 aaPredicted RBP12.97□□□□□ -0.33
CUX1-218ENST00000560541 CSF1RP07333 972 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 PDE6AP16499 860 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 ETF1P62495 437 aaKnown RBP12.97□□□□□ -0.33
CUX1-218ENST00000560541 RESP18Q5W5W9 173 aa12.97□□□□□ -0.33
CUX1-218ENST00000560541 GRAMD1CQ8IYS0 662 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms