RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 PHKA1P46020 1223 aa17.27■□□□□ 0.36
LDLR-213ENST00000560502 CENPQQ7L2Z9 268 aaPredicted RBP17.27■□□□□ 0.36
LDLR-213ENST00000560502 ITPRIPQ8IWB1 547 aa17.27■□□□□ 0.36
LDLR-213ENST00000560502 SH3TC2Q8TF17 1288 aa17.27■□□□□ 0.36
LDLR-213ENST00000560502 GNL3LQ9NVN8 582 aaKnown RBP17.27■□□□□ 0.36
LDLR-213ENST00000560502 CEP126Q9P2H0 1117 aa17.27■□□□□ 0.36
LDLR-213ENST00000560502 GAKO14976 1311 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 PDHXO00330 501 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 IL15P40933 162 aaPredicted RBP17.26■□□□□ 0.35
LDLR-213ENST00000560502 ZFPM1Q8IX07 1006 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 TMEM57Q8N5G2 664 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 COPRSQ9NQ92 184 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 USP40Q9NVE5 1235 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 CPA4Q9UI42 421 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 DENND2AQ9ULE3 1009 aa17.26■□□□□ 0.35
LDLR-213ENST00000560502 PDS5AQ29RF7 1337 aaKnown RBP17.25■□□□□ 0.35
LDLR-213ENST00000560502 SLC4A8Q2Y0W8 1093 aa17.25■□□□□ 0.35
LDLR-213ENST00000560502 TRIM47Q96LD4 638 aa17.25■□□□□ 0.35
LDLR-213ENST00000560502 IDI2Q9BXS1 227 aa17.25■□□□□ 0.35
LDLR-213ENST00000560502 SRRDQ9UH36 339 aa17.25■□□□□ 0.35
LDLR-213ENST00000560502 PA2G4Q9UQ80 394 aaKnown RBP17.25■□□□□ 0.35
LDLR-213ENST00000560502 TNNQ9UQP3 1299 aa17.25■□□□□ 0.35
LDLR-213ENST00000560502 LRRFIP2Q9Y608 721 aaKnown RBP17.25■□□□□ 0.35
LDLR-213ENST00000560502 TRIOBPQ9H2D6 2365 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 PHF20L1A8MW92 1017 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 CXCL11O14625 94 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 ENTPD3O75355 529 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 ADORA1P30542 326 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 PSMC4P43686 418 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 CCDC102BQ68D86 513 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 GPAT2Q6NUI2 795 aa17.24■□□□□ 0.35
LDLR-213ENST00000560502 MYCP01106 439 aaPredicted RBP17.23■□□□□ 0.35
LDLR-213ENST00000560502 BCRP11274 1271 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 OSBPP22059 807 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 RGS3P49796 1198 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 MAP3K10Q02779 954 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 RASGRF1Q13972 1273 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 SH3BP5LQ7L8J4 393 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 SHISA4Q96DD7 197 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 MEIS3Q99687 375 aa17.23■□□□□ 0.35
LDLR-213ENST00000560502 SCYL3Q8IZE3 742 aa17.22■□□□□ 0.35
LDLR-213ENST00000560502 ZGPATQ8N5A5 531 aaKnown RBP17.22■□□□□ 0.35
LDLR-213ENST00000560502 FAM163AQ96GL9 167 aaPredicted RBP17.22■□□□□ 0.35
LDLR-213ENST00000560502 PARK7Q99497 189 aaKnown RBP17.22■□□□□ 0.35
LDLR-213ENST00000560502 ZBTB40Q9NUA8 1239 aa17.22■□□□□ 0.35
LDLR-213ENST00000560502 HDAC5Q9UQL6 1122 aa17.22■□□□□ 0.35
LDLR-213ENST00000560502 A0A0G2JLL6 359 aaPredicted RBP17.21■□□□□ 0.35
LDLR-213ENST00000560502 ECM2O94769 699 aaPredicted RBP17.21■□□□□ 0.35
LDLR-213ENST00000560502 MTFR1Q15390 333 aa17.21■□□□□ 0.35
LDLR-213ENST00000560502 PRRT2Q7Z6L0 340 aaPredicted RBP17.21■□□□□ 0.35
LDLR-213ENST00000560502 MYPNQ86TC9 1320 aa17.21■□□□□ 0.34
LDLR-213ENST00000560502 ATAD5Q96QE3 1844 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 CYP2C8P10632 490 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 PTPRAP18433 802 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 HOXD10P28358 340 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 FXR1P51114 621 aaKnown RBP eCLIP17.2■□□□□ 0.34
LDLR-213ENST00000560502 MTX1Q13505 466 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 DDX4Q9NQI0 724 aaKnown RBP17.2■□□□□ 0.34
LDLR-213ENST00000560502 AFG3L2Q9Y4W6 797 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 LOC285556D6RIA3 1793 aa17.2■□□□□ 0.34
LDLR-213ENST00000560502 DDTLA6NHG4 134 aaPredicted RBP17.19■□□□□ 0.34
LDLR-213ENST00000560502 ZBTB7BO15156 539 aaPredicted RBP17.19■□□□□ 0.34
LDLR-213ENST00000560502 FMNL1O95466 1100 aaPredicted RBP17.19■□□□□ 0.34
LDLR-213ENST00000560502 GRK4P32298 578 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 TIMM10P62072 90 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 DZIP1Q86YF9 867 aaKnown RBP17.19■□□□□ 0.34
LDLR-213ENST00000560502 RAET1EQ8TD07 263 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 ZNF384Q8TF68 577 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 RWDD1Q9H446 243 aaPredicted RBP17.19■□□□□ 0.34
LDLR-213ENST00000560502 SLC45A1Q9Y2W3 748 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 ZHX2Q9Y6X8 837 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 MROH7-TTC4A0A0A0MT08 1334 aa17.19■□□□□ 0.34
LDLR-213ENST00000560502 DOCK3Q8IZD9 2030 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 A0A1B0GUL7 405 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 H0YGN5 161 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 SLURP2P0DP57 97 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 BTDP43251 543 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 FCGRTP55899 365 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 RHBDL3P58872 404 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 PRKCZQ05513 592 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 HDAC1Q13547 482 aaPredicted RBP17.18■□□□□ 0.34
LDLR-213ENST00000560502 FASTKD5Q7L8L6 764 aaKnown RBP17.18■□□□□ 0.34
LDLR-213ENST00000560502 UBE2Q1Q7Z7E8 422 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 SLF2Q8IX21 1173 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 XAGE2Q96GT9 111 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 PICK1Q9NRD5 415 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 ABCF2Q9UG63 623 aa17.18■□□□□ 0.34
LDLR-213ENST00000560502 COLQQ9Y215 455 aaPredicted RBP17.18■□□□□ 0.34
LDLR-213ENST00000560502 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.18■□□□□ 0.34
LDLR-213ENST00000560502 COL2A1P02458 1487 aaPredicted RBP17.18■□□□□ 0.34
LDLR-213ENST00000560502 GPR75-ASB3A0A0A6YYF3 556 aa17.17■□□□□ 0.34
LDLR-213ENST00000560502 CTNND1O60716 968 aaKnown RBP17.17■□□□□ 0.34
LDLR-213ENST00000560502 NPM3O75607 178 aaKnown RBP17.17■□□□□ 0.34
LDLR-213ENST00000560502 GJB1P08034 283 aa17.17■□□□□ 0.34
LDLR-213ENST00000560502 GJA8P48165 433 aa17.17■□□□□ 0.34
LDLR-213ENST00000560502 TFCP2Q12800 502 aa17.17■□□□□ 0.34
LDLR-213ENST00000560502 SPTY2D1Q68D10 685 aaPredicted RBP17.17■□□□□ 0.34
LDLR-213ENST00000560502 SIPA1L1O43166 1804 aa17.17■□□□□ 0.34
LDLR-213ENST00000560502 MAST2Q6P0Q8 1798 aa17.16■□□□□ 0.34
LDLR-213ENST00000560502 SRGAP3O43295 1099 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms