RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 PTCH2Q9Y6C5 1203 aa16.74■□□□□ 0.27
SMAD3-214ENST00000560402 ADGRA2Q96PE1 1338 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 CXCL11O14625 94 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 MAP4K4O95819 1239 aaPredicted RBP16.73■□□□□ 0.27
SMAD3-214ENST00000560402 TFCP2Q12800 502 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 C17orf99Q6UX52 265 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 GCC1Q96CN9 775 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 PARK7Q99497 189 aaKnown RBP16.73■□□□□ 0.27
SMAD3-214ENST00000560402 BRCA2P51587 3418 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 ATAD5Q96QE3 1844 aa16.73■□□□□ 0.27
SMAD3-214ENST00000560402 BTDP43251 543 aa16.72■□□□□ 0.27
SMAD3-214ENST00000560402 TIMM10P62072 90 aa16.72■□□□□ 0.27
SMAD3-214ENST00000560402 ERICH6Q7L0X2 663 aa16.72■□□□□ 0.27
SMAD3-214ENST00000560402 SCYL3Q8IZE3 742 aa16.72■□□□□ 0.27
SMAD3-214ENST00000560402 PICK1Q9NRD5 415 aa16.72■□□□□ 0.27
SMAD3-214ENST00000560402 MKI67P46013 3256 aaKnown RBP16.72■□□□□ 0.27
SMAD3-214ENST00000560402 PDHXO00330 501 aa16.71■□□□□ 0.27
SMAD3-214ENST00000560402 NPM3O75607 178 aaKnown RBP16.71■□□□□ 0.27
SMAD3-214ENST00000560402 ARID4AP29374 1257 aaPredicted RBP16.71■□□□□ 0.27
SMAD3-214ENST00000560402 GSTO1P78417 241 aa16.71■□□□□ 0.27
SMAD3-214ENST00000560402 MAP3K10Q02779 954 aa16.71■□□□□ 0.27
SMAD3-214ENST00000560402 ZSCAN29Q8IWY8 852 aaPredicted RBP16.71■□□□□ 0.27
SMAD3-214ENST00000560402 LOC285556D6RIA3 1793 aa16.71■□□□□ 0.27
SMAD3-214ENST00000560402 A0A0G2JLL6 359 aaPredicted RBP16.7■□□□□ 0.26
SMAD3-214ENST00000560402 PHF20L1A8MW92 1017 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 LDHCP07864 332 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 HOXD10P28358 340 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 MOGSQ13724 837 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 GORABQ5T7V8 394 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 FASTKD5Q7L8L6 764 aaKnown RBP16.7■□□□□ 0.26
SMAD3-214ENST00000560402 PRRT2Q7Z6L0 340 aaPredicted RBP16.7■□□□□ 0.26
SMAD3-214ENST00000560402 ZFPM1Q8IX07 1006 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 FRAT1Q92837 279 aaPredicted RBP16.7■□□□□ 0.26
SMAD3-214ENST00000560402 FOCADQ5VW36 1801 aa16.7■□□□□ 0.26
SMAD3-214ENST00000560402 GPR75-ASB3A0A0A6YYF3 556 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 CTNND1O60716 968 aaKnown RBP16.69■□□□□ 0.26
SMAD3-214ENST00000560402 UQCRFS1P1P0C7P4 283 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 MECOMQ03112 1051 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 G3BP1Q13283 466 aaKnown RBP eCLIP16.69■□□□□ 0.26
SMAD3-214ENST00000560402 SPATA5Q8NB90 893 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 NEUROD6Q96NK8 337 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 ARHGAP39Q9C0H5 1083 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 DDX4Q9NQI0 724 aaKnown RBP16.69■□□□□ 0.26
SMAD3-214ENST00000560402 HMG20BQ9P0W2 317 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 PCDH10Q9P2E7 1040 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 RCAN3Q9UKA8 241 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 SLC45A1Q9Y2W3 748 aa16.69■□□□□ 0.26
SMAD3-214ENST00000560402 CDK5RAP2Q96SN8 1893 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 PNMA6EA0A0J9YXQ4 647 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 TBC1D12O60347 775 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 PTPRAP18433 802 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 RHBDL3P58872 404 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 PICALMQ13492 652 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 SLC4A8Q2Y0W8 1093 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 ZKSCAN2Q63HK3 967 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 SH3BP5LQ7L8J4 393 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 GPR108Q9NPR9 543 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 SRRDQ9UH36 339 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 CPA4Q9UI42 421 aa16.68■□□□□ 0.26
SMAD3-214ENST00000560402 DDTLA6NHG4 134 aaPredicted RBP16.67■□□□□ 0.26
SMAD3-214ENST00000560402 IGSF3O75054 1194 aa16.67■□□□□ 0.26
SMAD3-214ENST00000560402 BCAR3O75815 825 aa16.67■□□□□ 0.26
SMAD3-214ENST00000560402 EN2P19622 333 aaPredicted RBP16.67■□□□□ 0.26
SMAD3-214ENST00000560402 PSMC4P43686 418 aa16.67■□□□□ 0.26
SMAD3-214ENST00000560402 GPAT2Q6NUI2 795 aa16.67■□□□□ 0.26
SMAD3-214ENST00000560402 NSUN4Q96CB9 384 aaKnown RBP16.67■□□□□ 0.26
SMAD3-214ENST00000560402 TBC1D2Q9BYX2 928 aa16.67■□□□□ 0.26
SMAD3-214ENST00000560402 ZHX2Q9Y6X8 837 aa16.67■□□□□ 0.26
SMAD3-214ENST00000560402 BCRP11274 1271 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 SH3TC2Q8TF17 1288 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 ZNF384Q8TF68 577 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 CLUAP1Q96AJ1 413 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 TRIM47Q96LD4 638 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 AFG3L2Q9Y4W6 797 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 MYPNQ86TC9 1320 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 SIPA1L1O43166 1804 aa16.66■□□□□ 0.26
SMAD3-214ENST00000560402 FMNL1O95466 1100 aaPredicted RBP16.65■□□□□ 0.26
SMAD3-214ENST00000560402 OSBPP22059 807 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 MCAMP43121 646 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 FCGRTP55899 365 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 POLA2Q14181 598 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 TMEM57Q8N5G2 664 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 RAET1EQ8TD07 263 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 NOL10Q9BSC4 688 aaKnown RBP16.65■□□□□ 0.26
SMAD3-214ENST00000560402 OSBPL5Q9H0X9 879 aaPredicted RBP16.65■□□□□ 0.26
SMAD3-214ENST00000560402 PPP4R2Q9NY27 417 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 RAI14Q9P0K7 980 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 TNNQ9UQP3 1299 aa16.65■□□□□ 0.26
SMAD3-214ENST00000560402 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.65■□□□□ 0.26
SMAD3-214ENST00000560402 CTGFP29279 349 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 GRK4P32298 578 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 PI16Q6UXB8 463 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 GADL1Q6ZQY3 521 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 NKX2-3Q8TAU0 364 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 SSH3Q8TE77 659 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 LRP2BPQ9P2M1 347 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 PNMA3Q9UL41 463 aa16.64■□□□□ 0.25
SMAD3-214ENST00000560402 MYO5AQ9Y4I1 1855 aaKnown RBP16.63■□□□□ 0.25
SMAD3-214ENST00000560402 CYP2C8P10632 490 aa16.63■□□□□ 0.25
SMAD3-214ENST00000560402 PLCG2P16885 1265 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms