RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PDHXO00330 501 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 PLCG2P16885 1265 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 PRMT2P55345 433 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 SCYL3Q8IZE3 742 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 PARK7Q99497 189 aaKnown RBP15.43■□□□□ 0.06
SNX1-209ENST00000559961 TRIM34Q9BYJ4 488 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 GPR108Q9NPR9 543 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 HMG20BQ9P0W2 317 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 ZHX2Q9Y6X8 837 aa15.43■□□□□ 0.06
SNX1-209ENST00000559961 GPR75-ASB3A0A0A6YYF3 556 aa15.42■□□□□ 0.06
SNX1-209ENST00000559961 CTNND1O60716 968 aaKnown RBP15.42■□□□□ 0.06
SNX1-209ENST00000559961 ARID4AP29374 1257 aaPredicted RBP15.42■□□□□ 0.06
SNX1-209ENST00000559961 SLC4A8Q2Y0W8 1093 aa15.42■□□□□ 0.06
SNX1-209ENST00000559961 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.42■□□□□ 0.06
SNX1-209ENST00000559961 KCNH4Q9UQ05 1017 aa15.42■□□□□ 0.06
SNX1-209ENST00000559961 FMNL1O95466 1100 aaPredicted RBP15.41■□□□□ 0.06
SNX1-209ENST00000559961 LACTBP83111 547 aaPredicted RBP15.41■□□□□ 0.06
SNX1-209ENST00000559961 NAA16Q6N069 864 aaPredicted RBP15.41■□□□□ 0.06
SNX1-209ENST00000559961 ZFPM1Q8IX07 1006 aa15.41■□□□□ 0.06
SNX1-209ENST00000559961 TEX11Q8IYF3 940 aa15.41■□□□□ 0.06
SNX1-209ENST00000559961 TNNQ9UQP3 1299 aa15.41■□□□□ 0.06
SNX1-209ENST00000559961 IGSF3O75054 1194 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 NPM3O75607 178 aaKnown RBP15.4■□□□□ 0.06
SNX1-209ENST00000559961 HSP90AB4PQ58FF6 505 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 TNNI3KQ59H18 835 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 GADL1Q6ZQY3 521 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 TBC1D9Q6ZT07 1266 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 ERC1Q8IUD2 1116 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 SSH3Q8TE77 659 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 NSUN4Q96CB9 384 aaKnown RBP15.4■□□□□ 0.06
SNX1-209ENST00000559961 CHMP4BQ9H444 224 aaKnown RBP15.4■□□□□ 0.06
SNX1-209ENST00000559961 FPGT-TNNI3KV9GXZ4 949 aa15.4■□□□□ 0.06
SNX1-209ENST00000559961 TBC1D12O60347 775 aa15.39■□□□□ 0.05
SNX1-209ENST00000559961 PTPRAP18433 802 aa15.39■□□□□ 0.05
SNX1-209ENST00000559961 POLA2Q14181 598 aa15.39■□□□□ 0.05
SNX1-209ENST00000559961 RAET1EQ8TD07 263 aa15.39■□□□□ 0.05
SNX1-209ENST00000559961 ARMC5Q96C12 935 aa15.39■□□□□ 0.05
SNX1-209ENST00000559961 CPA4Q9UI42 421 aa15.39■□□□□ 0.05
SNX1-209ENST00000559961 DDTLA6NHG4 134 aaPredicted RBP15.38■□□□□ 0.05
SNX1-209ENST00000559961 MCAMP43121 646 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 PSMC4P43686 418 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 PABPC4Q13310 644 aaKnown RBP eCLIP15.38■□□□□ 0.05
SNX1-209ENST00000559961 PRPF38BQ5VTL8 546 aaKnown RBP15.38■□□□□ 0.05
SNX1-209ENST00000559961 SMCR8Q8TEV9 937 aaPredicted RBP15.38■□□□□ 0.05
SNX1-209ENST00000559961 TBC1D2Q9BYX2 928 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 DHX36Q9H2U1 1008 aaKnown RBP15.38■□□□□ 0.05
SNX1-209ENST00000559961 C1orf115Q9H7X2 142 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 SNRKQ9NRH2 765 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 BIN2Q9UBW5 565 aaPredicted RBP15.38■□□□□ 0.05
SNX1-209ENST00000559961 PTCH2Q9Y6C5 1203 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 ZBED9Q6R2W3 1325 aa15.38■□□□□ 0.05
SNX1-209ENST00000559961 TRIM75PA6NK02 468 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 PHF20L1A8MW92 1017 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 ZBTB7BO15156 539 aaPredicted RBP15.37■□□□□ 0.05
SNX1-209ENST00000559961 ECM2O94769 699 aaPredicted RBP15.37■□□□□ 0.05
SNX1-209ENST00000559961 FCGRTP55899 365 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 MAP3K10Q02779 954 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 C17orf99Q6UX52 265 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 PI16Q6UXB8 463 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 CERS3Q8IU89 383 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 CRACR2BQ8N4Y2 399 aaPredicted RBP15.37■□□□□ 0.05
SNX1-209ENST00000559961 OSBPL5Q9H0X9 879 aaPredicted RBP15.37■□□□□ 0.05
SNX1-209ENST00000559961 AS3MTQ9HBK9 375 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 DDX4Q9NQI0 724 aaKnown RBP15.37■□□□□ 0.05
SNX1-209ENST00000559961 HERC5Q9UII4 1024 aaKnown RBP15.37■□□□□ 0.05
SNX1-209ENST00000559961 PNMA3Q9UL41 463 aa15.37■□□□□ 0.05
SNX1-209ENST00000559961 A0A0G2JLL6 359 aaPredicted RBP15.36■□□□□ 0.05
SNX1-209ENST00000559961 HMMRO75330 724 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 RHBDL3P58872 404 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 PRRT2Q7Z6L0 340 aaPredicted RBP15.36■□□□□ 0.05
SNX1-209ENST00000559961 ZNF512BQ96KM6 892 aaPredicted RBP15.36■□□□□ 0.05
SNX1-209ENST00000559961 TRIM47Q96LD4 638 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 DBNDD2Q9BQY9 259 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 AATFQ9NY61 560 aaKnown RBP eCLIP15.36■□□□□ 0.05
SNX1-209ENST00000559961 PI4KBQ9UBF8 816 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 SLC45A1Q9Y2W3 748 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 NOP58Q9Y2X3 529 aaKnown RBP15.36■□□□□ 0.05
SNX1-209ENST00000559961 AFG3L2Q9Y4W6 797 aa15.36■□□□□ 0.05
SNX1-209ENST00000559961 HLA-DOAP06340 250 aa15.35■□□□□ 0.05
SNX1-209ENST00000559961 UBXN2AP68543 259 aa15.35■□□□□ 0.05
SNX1-209ENST00000559961 SH3BP5LQ7L8J4 393 aa15.35■□□□□ 0.05
SNX1-209ENST00000559961 GCC1Q96CN9 775 aa15.35■□□□□ 0.05
SNX1-209ENST00000559961 ZNF333Q96JL9 665 aa15.35■□□□□ 0.05
SNX1-209ENST00000559961 SRRDQ9UH36 339 aa15.35■□□□□ 0.05
SNX1-209ENST00000559961 IDH1O75874 414 aaKnown RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 MYCP01106 439 aaPredicted RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 OSBPP22059 807 aa15.34■□□□□ 0.05
SNX1-209ENST00000559961 MAP3K12Q12852 859 aa15.34■□□□□ 0.05
SNX1-209ENST00000559961 TMED8Q6PL24 325 aaPredicted RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 FOXP4Q8IVH2 680 aaPredicted RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 SH3RF3Q8TEJ3 882 aaPredicted RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 TGFBRAP1Q8WUH2 860 aa15.34■□□□□ 0.05
SNX1-209ENST00000559961 ARHGAP39Q9C0H5 1083 aa15.34■□□□□ 0.05
SNX1-209ENST00000559961 CCDC8Q9H0W5 538 aaPredicted RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.34■□□□□ 0.05
SNX1-209ENST00000559961 AK9Q5TCS8 1911 aa15.34■□□□□ 0.05
SNX1-209ENST00000559961 MYH13Q9UKX3 1938 aa15.34■□□□□ 0.05
SNX1-209ENST00000559961 POTEFA5A3E0 1075 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 USP17L5A8MUK1 530 aa15.33■□□□□ 0.04
SNX1-209ENST00000559961 CYP2C8P10632 490 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms