RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 MYH13Q9UKX3 1938 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 PTPDC1A2A3K4 754 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 GOLGA8BA8MQT2 603 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 IFIT3O14879 490 aaKnown RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 PODNQ7Z5L7 613 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 SH3RF3Q8TEJ3 882 aaPredicted RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 ESR2Q92731 530 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 NOL10Q9BSC4 688 aaKnown RBP14.9□□□□□ -0.02
USP3-213ENST00000559711 KIF3AQ9Y496 699 aa14.9□□□□□ -0.02
USP3-213ENST00000559711 CYP2D7A0A087X1C5 515 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 SMIM22K7EJ46 135 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 ORC4O43929 436 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 GSE1Q14687 1217 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 SART3Q15020 963 aaKnown RBP14.89□□□□□ -0.03
USP3-213ENST00000559711 DOK7Q18PE1 504 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 APOA5Q6Q788 366 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 TMTC2Q8N394 836 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 CHAMP1Q96JM3 812 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 SENP2Q9HC62 589 aa14.89□□□□□ -0.03
USP3-213ENST00000559711 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.89□□□□□ -0.03
USP3-213ENST00000559711 VPS37CA5D8V6 355 aaPredicted RBP14.88□□□□□ -0.03
USP3-213ENST00000559711 PLCG2P16885 1265 aa14.88□□□□□ -0.03
USP3-213ENST00000559711 RRP12Q5JTH9 1297 aaKnown RBP14.88□□□□□ -0.03
USP3-213ENST00000559711 FAM184AQ8NB25 1140 aa14.88□□□□□ -0.03
USP3-213ENST00000559711 SNED1Q8TER0 1413 aa14.88□□□□□ -0.03
USP3-213ENST00000559711 DDX11Q96FC9 970 aa14.88□□□□□ -0.03
USP3-213ENST00000559711 TOMM22Q9NS69 142 aa14.88□□□□□ -0.03
USP3-213ENST00000559711 KIAA1551Q9HCM1 1747 aa14.88□□□□□ -0.03
USP3-213ENST00000559711 PRPF40AO75400 957 aaKnown RBP14.87□□□□□ -0.03
USP3-213ENST00000559711 SLC3A2P08195 630 aaKnown RBP14.87□□□□□ -0.03
USP3-213ENST00000559711 BTDP43251 543 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 USP5P45974 858 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 NT5C2P49902 561 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 GRIPAP1Q4V328 841 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 C12orf60Q5U649 245 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 CDC37L1Q7L3B6 337 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 CERS5Q8N5B7 392 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 G3V3G9 751 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 FDPSP14324 419 aaKnown RBP14.87□□□□□ -0.03
USP3-213ENST00000559711 RCAN1P53805 252 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 RHBDL3P58872 404 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 FKBP1AP62942 108 aaKnown RBP14.87□□□□□ -0.03
USP3-213ENST00000559711 KLHL40Q2TBA0 621 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 DCAF8Q5TAQ9 597 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 TMEM87AQ8NBN3 555 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 MCM9Q9NXL9 1143 aa14.87□□□□□ -0.03
USP3-213ENST00000559711 ERICH2A1L162 156 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 CCDC69A6NI79 296 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 ZBTB43O43298 467 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 USP17L8P0C7I0 530 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 CYP2D6P10635 497 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 KCNA3P22001 575 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 METAP2P50579 478 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP3-213ENST00000559711 WTAPQ15007 396 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 SEC23AQ15436 765 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 NFXL1Q6ZNB6 911 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 STK11IPQ8N1F8 1099 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 TTLL6Q8N841 843 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 SUPT20HQ8NEM7 779 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 UBAC1Q9BSL1 405 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 SLC12A7Q9Y666 1083 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 NID2Q14112 1375 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 CCDC88AQ3V6T2 1871 aa14.86□□□□□ -0.03
USP3-213ENST00000559711 CPLX1O14810 134 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 EVX2Q03828 476 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 PDE4BQ07343 736 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 KIAA2012Q0VF49 1180 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 STRIP1Q5VSL9 837 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 RGS22Q8NE09 1264 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 TGFBRAP1Q8WUH2 860 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 MRIQ9BWK5 157 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 FAM217BQ9NTX9 383 aaPredicted RBP14.85□□□□□ -0.03
USP3-213ENST00000559711 DAGLAQ9Y4D2 1042 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 DDX49Q9Y6V7 483 aaKnown RBP14.85□□□□□ -0.03
USP3-213ENST00000559711 SLX4Q8IY92 1834 aa14.85□□□□□ -0.03
USP3-213ENST00000559711 ROBO3Q96MS0 1386 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 RANBP6O60518 1105 aaKnown RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 ADD1P35611 737 aaKnown RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 FOXD4L6Q3SYB3 417 aaPredicted RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 FOXD4L3Q6VB84 417 aaPredicted RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 SYNE3Q6ZMZ3 975 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 TEX11Q8IYF3 940 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 ZSCAN10Q96SZ4 725 aaPredicted RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 ZKSCAN3Q9BRR0 538 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 DBNDD1Q9H9R9 158 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 ZNF219Q9P2Y4 722 aaPredicted RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 GOLGA8AA7E2F4 631 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 H3BQV1 296 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 C21orf2O43822 256 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 ECE2O60344 883 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 PRDM1O75626 825 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 CDKL5O76039 1030 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 DPEP1P16444 411 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 CDC27P30260 824 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 NTRK3Q16288 839 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 IFFO2Q5TF58 517 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 CPLX2Q6PUV4 134 aaKnown RBP14.84□□□□□ -0.03
USP3-213ENST00000559711 HHIPL2Q6UWX4 724 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 USP48Q86UV5 1035 aa14.84□□□□□ -0.03
USP3-213ENST00000559711 IQCA1Q86XH1 822 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms