RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TRPM4Q8TD43 1214 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 STK35Q8TDR2 534 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 GAL3ST3Q96A11 431 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 POP1Q99575 1024 aaKnown RBP4.46□□□□□ -1.7
TRAV28-201ENST00000557548 BRINP2Q9C0B6 783 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 SLKQ9H2G2 1235 aaPredicted RBP4.46□□□□□ -1.7
TRAV28-201ENST00000557548 TNKS2Q9H2K2 1166 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 CLEC4MQ9H2X3 399 aaPredicted RBP4.46□□□□□ -1.7
TRAV28-201ENST00000557548 SPC25Q9HBM1 224 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 CBX8Q9HC52 389 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 PCDH12Q9NPG4 1184 aa4.46□□□□□ -1.7
TRAV28-201ENST00000557548 NOP53Q9NZM5 478 aaKnown RBP4.46□□□□□ -1.7
TRAV28-201ENST00000557548 B3GALT4O96024 378 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 NME2P22392 152 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 NEUROD1Q13562 356 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 RASGRF1Q13972 1273 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 CEP135Q66GS9 1140 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 LLGL2Q6P1M3 1020 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 HOMER1Q86YM7 354 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 TRIM22Q8IYM9 498 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 REXO1Q8N1G1 1221 aaKnown RBP4.45□□□□□ -1.7
TRAV28-201ENST00000557548 GRIN3AQ8TCU5 1115 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 BSNDQ8WZ55 320 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 APPBP2Q92624 585 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 ZNF837Q96EG3 531 aaPredicted RBP4.45□□□□□ -1.7
TRAV28-201ENST00000557548 GMCL1Q96IK5 515 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 UBE2OQ9C0C9 1292 aaKnown RBP4.45□□□□□ -1.7
TRAV28-201ENST00000557548 DNAJB12Q9NXW2 375 aaKnown RBP4.45□□□□□ -1.7
TRAV28-201ENST00000557548 KLHL42Q9P2K6 505 aa4.45□□□□□ -1.7
TRAV28-201ENST00000557548 ATXN7L1Q9ULK2 861 aaPredicted RBP4.45□□□□□ -1.7
TRAV28-201ENST00000557548 TTBK1Q5TCY1 1321 aaPredicted RBP4.45□□□□□ -1.7
TRAV28-201ENST00000557548 B2RBV5 119 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 SHISA8B8ZZ34 492 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 PPP1R12AO14974 1030 aaPredicted RBP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 GRIN3BO60391 1043 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 SMNDC1O75940 238 aaKnown RBP eCLIP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 GJB6O95452 261 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 IMPDH2P12268 514 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 PTPN11Q06124 597 aaPredicted RBP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 SQSTM1Q13501 440 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 LRRC14Q15048 493 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 PPP2R5EQ16537 467 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 FXNQ16595 210 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 ZNF423Q2M1K9 1284 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 MTERF2Q49AM1 385 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 DIEXFQ68CQ4 756 aaKnown RBP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 ADAMTSL4Q6UY14 1074 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 RUFY4Q6ZNE9 571 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 NOL8Q76FK4 1167 aaKnown RBP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 GTPBP3Q969Y2 492 aaKnown RBP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 RBSNQ9H1K0 784 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 TPSG1Q9NRR2 321 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 SOX13Q9UN79 622 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 CYP8B1Q9UNU6 501 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 LEMD3Q9Y2U8 911 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 POLR3KQ9Y2Y1 108 aaPredicted RBP4.44□□□□□ -1.7
TRAV28-201ENST00000557548 PRKAB1Q9Y478 270 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 PCDHB14Q9Y5E9 798 aa4.44□□□□□ -1.7
TRAV28-201ENST00000557548 DDAH1O94760 285 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 CPB1P15086 417 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 ELNP15502 786 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 FGFR3P22607 806 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 ARNTP27540 789 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 GYS2P54840 703 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 RPL6Q02878 288 aaKnown RBP4.43□□□□□ -1.7
TRAV28-201ENST00000557548 C2orf27AQ580R0 203 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 C6orf15Q6UXA7 325 aaPredicted RBP4.43□□□□□ -1.7
TRAV28-201ENST00000557548 MPRIPQ6WCQ1 1025 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.43□□□□□ -1.7
TRAV28-201ENST00000557548 VN1R5Q7Z5H4 357 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 KIAA0907Q7Z7F0 614 aaPredicted RBP4.43□□□□□ -1.7
TRAV28-201ENST00000557548 SYT9Q86SS6 491 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 MICALL1Q8N3F8 863 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 RBBP8NLQ8NC74 664 aaPredicted RBP4.43□□□□□ -1.7
TRAV28-201ENST00000557548 EMILIN2Q9BXX0 1053 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 LACRTQ9GZZ8 138 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 TMEM260Q9NX78 707 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 PFDN2Q9UHV9 154 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 PRR12Q9ULL5 1215 aa4.43□□□□□ -1.7
TRAV28-201ENST00000557548 DIAPH1O60610 1272 aaKnown RBP4.42□□□□□ -1.7
TRAV28-201ENST00000557548 ESRRAP11474 423 aaPredicted RBP4.42□□□□□ -1.7
TRAV28-201ENST00000557548 PTPRAP18433 802 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 CDK8P49336 464 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 IRAK1P51617 712 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 CASP7P55210 303 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 CTBSQ01459 385 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 PCSK7Q16549 785 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 TKFCQ3LXA3 575 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 FAM182BQ5T319 152 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 C16orf86Q6ZW13 317 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 SPATC1Q76KD6 591 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 FAM35AQ86V20 835 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 RPUSD2Q8IZ73 545 aaKnown RBP4.42□□□□□ -1.7
TRAV28-201ENST00000557548 ANTXR1Q9H6X2 564 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 EHMT1Q9H9B1 1298 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 METTL14Q9HCE5 456 aaKnown RBP4.42□□□□□ -1.7
TRAV28-201ENST00000557548 SH2B1Q9NRF2 756 aaPredicted RBP4.42□□□□□ -1.7
TRAV28-201ENST00000557548 NAGPAQ9UK23 515 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 TRIM33Q9UPN9 1127 aa4.42□□□□□ -1.7
TRAV28-201ENST00000557548 KDM2BQ8NHM5 1336 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms