RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 DOCK1Q14185 1865 aa13.67□□□□□ -0.22
CCDC88C-213ENST00000557455 GNRH1P01148 92 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 ZKSCAN2Q63HK3 967 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 C17orf99Q6UX52 265 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 SH3BP5LQ7L8J4 393 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 SCYL3Q8IZE3 742 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 SPATA5Q8NB90 893 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 ZNF333Q96JL9 665 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 HMG20BQ9P0W2 317 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 CPA4Q9UI42 421 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 RFX7Q2KHR2 1363 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 ATRNL1Q5VV63 1379 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 PTPRFP10586 1907 aa13.66□□□□□ -0.22
CCDC88C-213ENST00000557455 MGAMO43451 1857 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 PHIPQ8WWQ0 1821 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 GPR75-ASB3A0A0A6YYF3 556 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 DDTLA6NHG4 134 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 PHF20L1A8MW92 1017 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 CXCL11O14625 94 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 ECM2O94769 699 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 LDHCP07864 332 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 EN2P19622 333 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 ARID4AP29374 1257 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 GSTO1P78417 241 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 MAP3K10Q02779 954 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 MOGSQ13724 837 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 TMEM57Q8N5G2 664 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 DDX4Q9NQI0 724 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 ZHX2Q9Y6X8 837 aa13.65□□□□□ -0.22
CCDC88C-213ENST00000557455 MKI67P46013 3256 aaKnown RBP13.65□□□□□ -0.23
CCDC88C-213ENST00000557455 CTNND1O60716 968 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 PTPRAP18433 802 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 PRMT2P55345 433 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 SLC4A8Q2Y0W8 1093 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 PI16Q6UXB8 463 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 TBC1D9Q6ZT07 1266 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 ZNF384Q8TF68 577 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 NSUN4Q96CB9 384 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 PARK7Q99497 189 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 RAI14Q9P0K7 980 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 ATAD5Q96QE3 1844 aa13.64□□□□□ -0.23
CCDC88C-213ENST00000557455 FMNL1O95466 1100 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 UQCRFS1P1P0C7P4 283 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 SLURP2P0DP57 97 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 HOXD10P28358 340 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 MCAMP43121 646 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 PSMC4P43686 418 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 RHBDL3P58872 404 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 HNRNPUQ00839 825 aaKnown RBP eCLIP13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 GPAT2Q6NUI2 795 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 FASTKD5Q7L8L6 764 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 SH3TC2Q8TF17 1288 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 AFG3L2Q9Y4W6 797 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 ADGRA2Q96PE1 1338 aa13.63□□□□□ -0.23
CCDC88C-213ENST00000557455 MYO5AQ9Y4I1 1855 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 A0A0G2JLL6 359 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 NPM3O75607 178 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 MAP4K4O95819 1239 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 MYCP01106 439 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 CYP2C8P10632 490 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 CTGFP29279 349 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 OS9Q13438 667 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 POLA2Q14181 598 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 GADL1Q6ZQY3 521 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 PRRT2Q7Z6L0 340 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 FTSJ3Q8IY81 847 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 TRIM47Q96LD4 638 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 GPR108Q9NPR9 543 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 LRP2BPQ9P2M1 347 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 SRRDQ9UH36 339 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 MAST2Q6P0Q8 1798 aa13.62□□□□□ -0.23
CCDC88C-213ENST00000557455 CDK5RAP2Q96SN8 1893 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 TBC1D12O60347 775 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 OSBPP22059 807 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 ATP8B2P98198 1209 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 TNNI3KQ59H18 835 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 CCDC158Q5M9N0 1113 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 TTC39AQ5SRH9 613 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 SSH3Q8TE77 659 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 NOL10Q9BSC4 688 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 FPGT-TNNI3KV9GXZ4 949 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 MYPNQ86TC9 1320 aa13.61□□□□□ -0.23
CCDC88C-213ENST00000557455 TRIM75PA6NK02 468 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 SURF6O75683 361 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 BCRP11274 1271 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 ITPRIPQ8IWB1 547 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 TEX11Q8IYF3 940 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 RAET1EQ8TD07 263 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 GCC1Q96CN9 775 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 OSBPL5Q9H0X9 879 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 C1orf115Q9H7X2 142 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 SNRKQ9NRH2 765 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 COL2A1P02458 1487 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 FOCADQ5VW36 1801 aa13.6□□□□□ -0.23
CCDC88C-213ENST00000557455 FAM196BA6NMK8 535 aa13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 BAG3O95817 575 aa13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 GRK4P32298 578 aa13.59□□□□□ -0.23
CCDC88C-213ENST00000557455 FCGRTP55899 365 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms