RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 GRIK5Q16478 980 aa12.14□□□□□ -0.47
NEDD1-211ENST00000557454 LHX8Q68G74 356 aa12.14□□□□□ -0.47
NEDD1-211ENST00000557454 FAM83AQ86UY5 434 aa12.14□□□□□ -0.47
NEDD1-211ENST00000557454 BADQ92934 168 aa12.14□□□□□ -0.47
NEDD1-211ENST00000557454 GAS2L1Q99501 681 aaPredicted RBP12.14□□□□□ -0.47
NEDD1-211ENST00000557454 ZNF576Q9H609 170 aa12.14□□□□□ -0.47
NEDD1-211ENST00000557454 PRDM5Q9NQX1 630 aaPredicted RBP12.14□□□□□ -0.47
NEDD1-211ENST00000557454 TMOD2Q9NZR1 351 aa12.14□□□□□ -0.47
NEDD1-211ENST00000557454 FAM86C2PA6NEL3 165 aa12.13□□□□□ -0.47
NEDD1-211ENST00000557454 CYP2B6P20813 491 aa12.13□□□□□ -0.47
NEDD1-211ENST00000557454 CCND3P30281 292 aaPredicted RBP12.13□□□□□ -0.47
NEDD1-211ENST00000557454 RIPK4P57078 832 aa12.13□□□□□ -0.47
NEDD1-211ENST00000557454 AKNAD1Q5T1N1 836 aa12.13□□□□□ -0.47
NEDD1-211ENST00000557454 RNPC3Q96LT9 517 aaKnown RBP12.13□□□□□ -0.47
NEDD1-211ENST00000557454 METTL22Q9BUU2 404 aaPredicted RBP12.13□□□□□ -0.47
NEDD1-211ENST00000557454 CACNB2Q08289 660 aaPredicted RBP12.12□□□□□ -0.47
NEDD1-211ENST00000557454 C11orf16Q9NQ32 467 aa12.12□□□□□ -0.47
NEDD1-211ENST00000557454 ATP11BQ9Y2G3 1177 aa12.12□□□□□ -0.47
NEDD1-211ENST00000557454 LAS1LQ9Y4W2 734 aaKnown RBP12.12□□□□□ -0.47
NEDD1-211ENST00000557454 ZHX2Q9Y6X8 837 aa12.12□□□□□ -0.47
NEDD1-211ENST00000557454 CHL1O00533 1208 aa12.11□□□□□ -0.47
NEDD1-211ENST00000557454 IGKV5-2P06315 115 aa12.11□□□□□ -0.47
NEDD1-211ENST00000557454 BMP1P13497 986 aa12.11□□□□□ -0.47
NEDD1-211ENST00000557454 FKBP1CQ5VVH2 108 aa12.11□□□□□ -0.47
NEDD1-211ENST00000557454 PRDM12Q9H4Q4 367 aa12.11□□□□□ -0.47
NEDD1-211ENST00000557454 MYH3P11055 1940 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 ZKSCAN1P17029 563 aaPredicted RBP12.1□□□□□ -0.47
NEDD1-211ENST00000557454 TREML2Q5T2D2 321 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 DUSP27Q5VZP5 1158 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 UBE3BQ7Z3V4 1068 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 TDRD7Q8NHU6 1098 aaKnown RBP12.1□□□□□ -0.47
NEDD1-211ENST00000557454 TEKT1Q969V4 418 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 TIFAQ96CG3 184 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 AGTPBP1Q9UPW5 1226 aa12.1□□□□□ -0.47
NEDD1-211ENST00000557454 TCF20Q9UGU0 1960 aaKnown RBP12.09□□□□□ -0.47
NEDD1-211ENST00000557454 GPR37L1O60883 481 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 PTPRAP18433 802 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 EPHB4P54760 987 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 TFF2Q03403 129 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 ADGRE1Q14246 886 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 APOBEC3HQ6NTF7 200 aaKnown RBP12.09□□□□□ -0.47
NEDD1-211ENST00000557454 RTN4Q9NQC3 1192 aaKnown RBP12.09□□□□□ -0.47
NEDD1-211ENST00000557454 PDLIM7Q9NR12 457 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 CXXC1Q9P0U4 656 aaPredicted RBP12.09□□□□□ -0.47
NEDD1-211ENST00000557454 AFG3L2Q9Y4W6 797 aa12.09□□□□□ -0.47
NEDD1-211ENST00000557454 CHD9Q3L8U1 2897 aa12.08□□□□□ -0.47
NEDD1-211ENST00000557454 TRIM43BA6NCK2 446 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 TRIM75PA6NK02 468 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 GYG1P46976 350 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 KCNQ1P51787 676 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 HDLBPQ00341 1268 aaKnown RBP12.08□□□□□ -0.48
NEDD1-211ENST00000557454 TCP10Q12799 353 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 CWF19L2Q2TBE0 894 aaKnown RBP12.08□□□□□ -0.48
NEDD1-211ENST00000557454 SH3RF1Q7Z6J0 888 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 SCYL3Q8IZE3 742 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 TRIM43Q96BQ3 446 aaPredicted RBP12.08□□□□□ -0.48
NEDD1-211ENST00000557454 ZDHHC15Q96MV8 337 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 PICK1Q9NRD5 415 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 PNMA3Q9UL41 463 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 MAP3K2Q9Y2U5 619 aa12.08□□□□□ -0.48
NEDD1-211ENST00000557454 REV3LO60673 3130 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 PLXNB2O15031 1838 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 PLIN1O60240 522 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 IGFBP4P22692 258 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 LMOD3Q0VAK6 560 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 CCL14Q16627 93 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 CCDC84Q86UT8 332 aaPredicted RBP12.07□□□□□ -0.48
NEDD1-211ENST00000557454 FAM151AQ8WW52 585 aa12.07□□□□□ -0.48
NEDD1-211ENST00000557454 KHSRPQ92945 711 aaKnown RBP eCLIP12.07□□□□□ -0.482e-6■■■■□ 20
NEDD1-211ENST00000557454 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.07□□□□□ -0.48
NEDD1-211ENST00000557454 A0A1B0GUL6 1792 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.06□□□□□ -0.48
NEDD1-211ENST00000557454 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.06□□□□□ -0.48
NEDD1-211ENST00000557454 ANKRD18BA2A2Z9 1011 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 XRCC5P13010 732 aaKnown RBP12.06□□□□□ -0.48
NEDD1-211ENST00000557454 HIBADHP31937 336 aaKnown RBP12.06□□□□□ -0.48
NEDD1-211ENST00000557454 GCLCP48506 637 aaPredicted RBP12.06□□□□□ -0.48
NEDD1-211ENST00000557454 CHAF1AQ13111 956 aaPredicted RBP12.06□□□□□ -0.48
NEDD1-211ENST00000557454 TRIM60Q495X7 471 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 SOCS4Q8WXH5 440 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 NUDT12Q9BQG2 462 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 PLA2G12BQ9BX93 195 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 DAGLAQ9Y4D2 1042 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 WDFY4Q6ZS81 3184 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 CHD7Q9P2D1 2997 aa12.06□□□□□ -0.48
NEDD1-211ENST00000557454 MYO9BQ13459 2157 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 PHF20L1A8MW92 1017 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 H7C1W4 665 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 DNM1LO00429 736 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 DDX58O95786 925 aaKnown RBP12.05□□□□□ -0.48
NEDD1-211ENST00000557454 CSF1RP07333 972 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 ITGB8P26012 769 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 NHLH1Q02575 133 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 NFIAQ12857 509 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 TRMT44Q8IYL2 757 aaKnown RBP12.05□□□□□ -0.48
NEDD1-211ENST00000557454 FAM84BQ96KN1 310 aaPredicted RBP12.05□□□□□ -0.48
NEDD1-211ENST00000557454 PNNQ9H307 717 aaKnown RBP12.05□□□□□ -0.48
NEDD1-211ENST00000557454 IQSEC3Q9UPP2 1182 aaPredicted RBP12.05□□□□□ -0.48
NEDD1-211ENST00000557454 ATRNL1Q5VV63 1379 aa12.05□□□□□ -0.48
NEDD1-211ENST00000557454 AK9Q5TCS8 1911 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms