RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 EDC3Q96F86 508 aaKnown RBP12.96□□□□□ -0.33
LINC00239-201ENST00000556973 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.96□□□□□ -0.33
LINC00239-201ENST00000556973 WBP1LQ9NX94 342 aa12.96□□□□□ -0.33
LINC00239-201ENST00000556973 MYH7P12883 1935 aa12.96□□□□□ -0.34
LINC00239-201ENST00000556973 RFX7Q2KHR2 1363 aa12.95□□□□□ -0.34
LINC00239-201ENST00000556973 KIF23Q02241 960 aaPredicted RBP12.95□□□□□ -0.34
LINC00239-201ENST00000556973 ZSCAN25Q6NSZ9 544 aa12.95□□□□□ -0.34
LINC00239-201ENST00000556973 MIGA2Q7L4E1 593 aa12.95□□□□□ -0.34
LINC00239-201ENST00000556973 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.95□□□□□ -0.34
LINC00239-201ENST00000556973 CSRNP1Q96S65 589 aa12.95□□□□□ -0.34
LINC00239-201ENST00000556973 BEGAINQ9BUH8 593 aa12.95□□□□□ -0.34
LINC00239-201ENST00000556973 ZNF341Q9BYN7 854 aa12.95□□□□□ -0.34
LINC00239-201ENST00000556973 DDX4Q9NQI0 724 aaKnown RBP12.95□□□□□ -0.34
LINC00239-201ENST00000556973 TCRBV5S4A2TA0A5A2 114 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 DDTLA6NHG4 134 aaPredicted RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 GLRX3O76003 335 aaKnown RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 HSPA1AP0DMV8 641 aaKnown RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 HSPA1BP0DMV9 641 aaKnown RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 PDE6AP16499 860 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 MX1P20591 662 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 DYNLL1P63167 89 aaKnown RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 MAP3K10Q02779 954 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 SH3BP5LQ7L8J4 393 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 TGFBRAP1Q8WUH2 860 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 AIDAQ96BJ3 306 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 CLMNQ96JQ2 1002 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 OSBPL5Q9H0X9 879 aaPredicted RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 DHX36Q9H2U1 1008 aaKnown RBP12.94□□□□□ -0.34
LINC00239-201ENST00000556973 CSADQ9Y600 493 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 OTOFQ9HC10 1997 aa12.94□□□□□ -0.34
LINC00239-201ENST00000556973 SALL3Q9BXA9 1300 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 ZNF532Q9HCE3 1301 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 COL2A1P02458 1487 aaPredicted RBP12.93□□□□□ -0.34
LINC00239-201ENST00000556973 MAGEB6P1A0A0J9YX57 407 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 TBC1D12O60347 775 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 ZBTB48P10074 688 aaPredicted RBP12.93□□□□□ -0.34
LINC00239-201ENST00000556973 ADD2P35612 726 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 INHBEP58166 350 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 SPRYD7Q5W111 196 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 B4GALNT3Q6L9W6 998 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 MIGA1Q8NAN2 632 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 PI4K2BQ8TCG2 481 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 WRNIP1Q96S55 665 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 ZIC5Q96T25 663 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 RIOK1Q9BRS2 568 aaKnown RBP12.93□□□□□ -0.34
LINC00239-201ENST00000556973 STAP2Q9UGK3 403 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 ZNF112Q9UJU3 913 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 LAMB1P07942 1786 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 ATRNL1Q5VV63 1379 aa12.93□□□□□ -0.34
LINC00239-201ENST00000556973 CA12O43570 354 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 USP5P45974 858 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 TM4SF4P48230 202 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 NUCB1Q02818 461 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 VGLL4Q14135 290 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 UBE3CQ15386 1083 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 LRRFIP1Q32MZ4 808 aaKnown RBP12.92□□□□□ -0.34
LINC00239-201ENST00000556973 TSHZ3Q63HK5 1081 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 CHD1LQ86WJ1 897 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 MAPKAPK5Q8IW41 473 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 KBTBD3Q8NAB2 608 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 OTUD7AQ8TE49 926 aaPredicted RBP12.92□□□□□ -0.34
LINC00239-201ENST00000556973 WNK4Q96J92 1243 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 LNPKQ9C0E8 428 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 ELP3Q9H9T3 547 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.92□□□□□ -0.34
LINC00239-201ENST00000556973 PI4KBQ9UBF8 816 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 MYH1P12882 1939 aa12.92□□□□□ -0.34
LINC00239-201ENST00000556973 FLT1P17948 1338 aa12.91□□□□□ -0.34
LINC00239-201ENST00000556973 PHF20L1A8MW92 1017 aa12.91□□□□□ -0.34
LINC00239-201ENST00000556973 ZFYP08048 801 aaPredicted RBP12.91□□□□□ -0.34
LINC00239-201ENST00000556973 PDE1AP54750 535 aa12.91□□□□□ -0.34
LINC00239-201ENST00000556973 FOXP4Q8IVH2 680 aaPredicted RBP12.91□□□□□ -0.34
LINC00239-201ENST00000556973 ZKSCAN4Q969J2 545 aaPredicted RBP12.91□□□□□ -0.34
LINC00239-201ENST00000556973 OPTNQ96CV9 577 aa12.91□□□□□ -0.34
LINC00239-201ENST00000556973 PCNTO95613 3336 aa12.91□□□□□ -0.34
LINC00239-201ENST00000556973 MANSC4A6NHS7 340 aaPredicted RBP12.9□□□□□ -0.34
LINC00239-201ENST00000556973 CTCFP49711 727 aaPredicted RBP12.9□□□□□ -0.34
LINC00239-201ENST00000556973 SREBF2Q12772 1141 aa12.9□□□□□ -0.34
LINC00239-201ENST00000556973 MKRN3Q13064 507 aaKnown RBP12.9□□□□□ -0.34
LINC00239-201ENST00000556973 ERO1BQ86YB8 467 aa12.9□□□□□ -0.34
LINC00239-201ENST00000556973 CRNKL1Q9BZJ0 848 aaKnown RBP12.9□□□□□ -0.34
LINC00239-201ENST00000556973 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.9□□□□□ -0.34
LINC00239-201ENST00000556973 HERC5Q9UII4 1024 aaKnown RBP12.9□□□□□ -0.34
LINC00239-201ENST00000556973 SPDYE5A6NIY4 337 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 FOXN1O15353 648 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 RNF113AO15541 343 aaKnown RBP12.89□□□□□ -0.35
LINC00239-201ENST00000556973 CTNND1O60716 968 aaKnown RBP12.89□□□□□ -0.35
LINC00239-201ENST00000556973 INPP5BP32019 993 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 PPATQ06203 517 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 NOL9Q5SY16 702 aaKnown RBP12.89□□□□□ -0.35
LINC00239-201ENST00000556973 METTL16Q86W50 562 aaKnown RBP12.89□□□□□ -0.35
LINC00239-201ENST00000556973 OSBPL3Q9H4L5 887 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 SAGE1Q9NXZ1 904 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 PALD1Q9ULE6 856 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 SNCAIPQ9Y6H5 919 aa12.89□□□□□ -0.35
LINC00239-201ENST00000556973 HLA-DOAP06340 250 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 GJA5P36382 358 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 SLFNL1Q499Z3 407 aa12.88□□□□□ -0.35
LINC00239-201ENST00000556973 TTC6Q86TZ1 520 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms