RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	MOGS	Q13724	837 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	CCDC184	Q52MB2	194 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	ANKRD23	Q86SG2	305 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	FAM83A	Q86UY5	434 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	NKX2-3	Q8TAU0	364 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	TEKT1	Q969V4	418 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	KAZALD1	Q96I82	304 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	LRCH3	Q96II8	777 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	ZDHHC15	Q96MV8	337 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	UNC93B1	Q9H1C4	597 aa		10.95	□□□□□ -0.66
SYNE2-222	ENST00000556725	CACNA1F	O60840	1977 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	HOXD10	P28358	340 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	PRKCZ	Q05513	592 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	U2AF1L4	Q8WU68	220 aa	Known RBP	10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	SUCLG2	Q96I99	432 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	HTATIP2	Q9BUP3	242 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	STAP2	Q9UGK3	403 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	NR2E3	Q9Y5X4	410 aa		10.94	□□□□□ -0.66
SYNE2-222	ENST00000556725	FRAT2	O75474	233 aa	Predicted RBP	10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	FARP2	O94887	1054 aa	Predicted RBP	10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	CYP2C8	P10632	490 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	CHRM1	P11229	460 aa	Predicted RBP	10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	BCAM	P50895	628 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	EXOSC9	Q06265	439 aa	Known RBP	10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	CCDC27	Q2M243	656 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	LRRC24	Q50LG9	513 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	GPAT2	Q6NUI2	795 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	VPS37D	Q86XT2	251 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	RNF166	Q96A37	237 aa	Predicted RBP	10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	MRI	Q9BWK5	157 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	ZNF341	Q9BYN7	854 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	ZNF112	Q9UJU3	913 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	KCNH4	Q9UQ05	1017 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	MGAM	O43451	1857 aa		10.93	□□□□□ -0.66
SYNE2-222	ENST00000556725	LAMA3	Q16787	3333 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	AK9	Q5TCS8	1911 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	FANCI	Q9NVI1	1328 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	SGPL1	O95470	568 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	BCR	P11274	1271 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	UBXN2A	P68543	259 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	TCP10	Q12799	353 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	FKBP1C	Q5VVH2	108 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	DCAF15	Q66K64	600 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	TBC1D22A	Q8WUA7	517 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	TMOD2	Q9NZR1	351 aa		10.92	□□□□□ -0.66
SYNE2-222	ENST00000556725	IL16	Q14005	1332 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	ADCY3	O60266	1144 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	EVI5	O60447	810 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	TFRC	P02786	760 aa	Known RBP	10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	ELN	P15502	786 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	CAVIN4	Q5BKX8	364 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	SLC4A10	Q6U841	1118 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	ZFPM1	Q8IX07	1006 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	FAM151A	Q8WW52	585 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	HOOK2	Q96ED9	719 aa		10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	SALL2	Q9Y467	1007 aa	Predicted RBP	10.91	□□□□□ -0.66
SYNE2-222	ENST00000556725	MROH5	Q6ZUA9	1318 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	ALPK3	Q96L96	1907 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	PDE8B	O95263	885 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	PSEN1	P49768	467 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	FLT3LG	P49771	235 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	FCGRT	P55899	365 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	NFIA	Q12857	509 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	GSE1	Q14687	1217 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	METTL24	Q5JXM2	366 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	CDC42EP5	Q6NZY7	148 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	HHIPL2	Q6UWX4	724 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	VGLL2	Q8N8G2	317 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	KLHDC4	Q8TBB5	520 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	DEFB118	Q96PH6	123 aa		10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	BICC1	Q9H694	974 aa	Known RBP	10.9	□□□□□ -0.66
SYNE2-222	ENST00000556725	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.9	□□□□□ -0.67
SYNE2-222	ENST00000556725	DOCK3	Q8IZD9	2030 aa		10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	ALDH1L1	O75891	902 aa		10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	INHA	P05111	366 aa		10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	SLURP2	P0DP57	97 aa		10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	NOL9	Q5SY16	702 aa	Known RBP	10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	PAWR	Q96IZ0	340 aa	Known RBP	10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	PARK7	Q99497	189 aa	Known RBP	10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	FAM198A	Q9UFP1	575 aa		10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725	DAGLA	Q9Y4D2	1042 aa		10.89	□□□□□ -0.67
SYNE2-222	ENST00000556725		A0A1W2PPC1	479 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	CXCL11	O14625	94 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	DIXDC1	Q155Q3	683 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725		Q7L0L9	218 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	ANKRD44	Q8N8A2	993 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	DIS3L	Q8TF46	1054 aa	Known RBP	10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	SRCIN1	Q9C0H9	1055 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	SUGT1	Q9Y2Z0	365 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	ZHX2	Q9Y6X8	837 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	UNC80	Q8N2C7	3258 aa		10.88	□□□□□ -0.67
SYNE2-222	ENST00000556725	MAST3	O60307	1309 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725		A0A0G2JLL6	359 aa	Predicted RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	PHF20L1	A8MW92	1017 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	FGFR2	P21802	821 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	RABL6	Q3YEC7	729 aa	Predicted RBP	10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	GADL1	Q6ZQY3	521 aa		10.87	□□□□□ -0.67
SYNE2-222	ENST00000556725	PRRT2	Q7Z6L0	340 aa	Predicted RBP	10.87	□□□□□ -0.67

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