RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 DNAAF4Q8WXU2 420 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 MYH16Q9H6N6 1097 aa12.72□□□□□ -0.37
SCFD1-220ENST00000556486 ARAP2Q8WZ64 1704 aa12.71□□□□□ -0.37
SCFD1-220ENST00000556486 IRS2Q9Y4H2 1338 aa12.71□□□□□ -0.37
SCFD1-220ENST00000556486 C15orf52Q6ZUT6 534 aaKnown RBP12.71□□□□□ -0.37
SCFD1-220ENST00000556486 ZNF70Q9UC06 446 aaPredicted RBP12.71□□□□□ -0.37
SCFD1-220ENST00000556486 SOX1O00570 391 aaPredicted RBP12.7□□□□□ -0.38
SCFD1-220ENST00000556486 VAMP4O75379 141 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 CTGFP29279 349 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 GTF2A2P52657 109 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 CACNB3P54284 484 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 LACTBP83111 547 aaPredicted RBP12.7□□□□□ -0.38
SCFD1-220ENST00000556486 SKIV2LQ15477 1246 aaKnown RBP12.7□□□□□ -0.38
SCFD1-220ENST00000556486 TEPSINQ96N21 525 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 ZSWIM6Q9HCJ5 1215 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 CHMP3Q9Y3E7 222 aa12.7□□□□□ -0.38
SCFD1-220ENST00000556486 BTBD19C9JJ37 291 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 FKBP5Q13451 457 aaPredicted RBP12.69□□□□□ -0.38
SCFD1-220ENST00000556486 KIF22Q14807 665 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 ARHGEF6Q15052 776 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 ZNF804AQ7Z570 1209 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 LRCH3Q96II8 777 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 ZNF594Q96JF6 807 aaPredicted RBP12.69□□□□□ -0.38
SCFD1-220ENST00000556486 GPCPD1Q9NPB8 672 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 CPA4Q9UI42 421 aa12.69□□□□□ -0.38
SCFD1-220ENST00000556486 TTF2Q9UNY4 1162 aaKnown RBP12.69□□□□□ -0.38
SCFD1-220ENST00000556486 LAMA3Q16787 3333 aa12.68□□□□□ -0.38
SCFD1-220ENST00000556486 UNCXA6NJT0 531 aa12.68□□□□□ -0.38
SCFD1-220ENST00000556486 IL1R1P14778 569 aa12.68□□□□□ -0.38
SCFD1-220ENST00000556486 GRIK5Q16478 980 aa12.68□□□□□ -0.38
SCFD1-220ENST00000556486 GPR153Q6NV75 609 aa12.68□□□□□ -0.38
SCFD1-220ENST00000556486 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.68□□□□□ -0.38
SCFD1-220ENST00000556486 ZKSCAN4Q969J2 545 aaPredicted RBP12.68□□□□□ -0.38
SCFD1-220ENST00000556486 CSADQ9Y600 493 aa12.68□□□□□ -0.38
SCFD1-220ENST00000556486 ANKRD18BA2A2Z9 1011 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 TLR2O60603 784 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 SSTR3P32745 418 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-220ENST00000556486 FOXO4P98177 505 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 MDM2Q00987 491 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-220ENST00000556486 TNFAIP1Q13829 316 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 MFSD14BQ5SR56 506 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 BEND3Q5T5X7 828 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 DZIP1LQ8IYY4 767 aaKnown RBP12.67□□□□□ -0.38
SCFD1-220ENST00000556486 TRIM47Q96LD4 638 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 MRS2Q9HD23 443 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 NPDC1Q9NQX5 325 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-220ENST00000556486 BIN2Q9UBW5 565 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-220ENST00000556486 IQSEC3Q9UPP2 1182 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-220ENST00000556486 SNCAIPQ9Y6H5 919 aa12.67□□□□□ -0.38
SCFD1-220ENST00000556486 CCL5P13501 91 aa12.66□□□□□ -0.38
SCFD1-220ENST00000556486 PSMC4P43686 418 aa12.66□□□□□ -0.38
SCFD1-220ENST00000556486 GYG1P46976 350 aa12.66□□□□□ -0.38
SCFD1-220ENST00000556486 EMP3P54852 163 aa12.66□□□□□ -0.38
SCFD1-220ENST00000556486 FKBP1AP62942 108 aaKnown RBP12.66□□□□□ -0.38
SCFD1-220ENST00000556486 WRNIP1Q96S55 665 aa12.66□□□□□ -0.38
SCFD1-220ENST00000556486 CDHR5Q9HBB8 845 aa12.66□□□□□ -0.38
SCFD1-220ENST00000556486 FMNL1O95466 1100 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-220ENST00000556486 CETPP11597 493 aa12.65□□□□□ -0.38
SCFD1-220ENST00000556486 EXOSC9Q06265 439 aaKnown RBP12.65□□□□□ -0.38
SCFD1-220ENST00000556486 IFIT5Q13325 482 aaKnown RBP12.65□□□□□ -0.38
SCFD1-220ENST00000556486 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-220ENST00000556486 RAET1EQ8TD07 263 aa12.65□□□□□ -0.38
SCFD1-220ENST00000556486 RNF208Q9H0X6 261 aa12.65□□□□□ -0.38
SCFD1-220ENST00000556486 PRO3102Q9H379 93 aa12.65□□□□□ -0.38
SCFD1-220ENST00000556486 RIPOR2Q9Y4F9 1068 aa12.65□□□□□ -0.38
SCFD1-220ENST00000556486 SPDYE5A6NIY4 337 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 GRM8O00222 908 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 ZBTB7BO15156 539 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-220ENST00000556486 WDHD1O75717 1129 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-220ENST00000556486 GRK4P32298 578 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 CRKP46108 304 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 CHAF1AQ13111 956 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-220ENST00000556486 MIGA2Q7L4E1 593 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 STAP2Q9UGK3 403 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 SRRDQ9UH36 339 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 ALPK3Q96L96 1907 aa12.64□□□□□ -0.39
SCFD1-220ENST00000556486 MYPNQ86TC9 1320 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 MGAMO43451 1857 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 UNC80Q8N2C7 3258 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 ANP32CO43423 234 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 ALDH1L1O75891 902 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 FARP2O94887 1054 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-220ENST00000556486 SNAPC2Q13487 334 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 TAF7LQ5H9L4 462 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 EPHA10Q5JZY3 1008 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 UBE2Q1Q7Z7E8 422 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 PHOX2BQ99453 314 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 HTATIP2Q9BUP3 242 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 UNC93B1Q9H1C4 597 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 SERPINA10Q9UK55 444 aa12.63□□□□□ -0.39
SCFD1-220ENST00000556486 POTEB3A0JP26 581 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 F6X3S4 739 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 PDHXO00330 501 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 RAD21O60216 631 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 INPP5BP32019 993 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 GJA8P48165 433 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 TNNI2P48788 182 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 PRKCZQ05513 592 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 POTEBQ6S5H4 581 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 LMBR1LQ6UX01 489 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms