RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 CCDC63Q8NA47 563 aa19.58■□□□□ 0.72
SYNE3-204ENST00000555759 LMBR1LQ6UX01 489 aa19.58■□□□□ 0.72
SYNE3-204ENST00000555759 CDC5LQ99459 802 aaKnown RBP19.58■□□□□ 0.72
SYNE3-204ENST00000555759 CDC23Q9UJX2 597 aa19.58■□□□□ 0.72
SYNE3-204ENST00000555759 CSGALNACT2Q8N6G5 542 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 GBP5Q96PP8 586 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 HAUS4Q9H6D7 363 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 SPTLC3Q9NUV7 552 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 CCDC151A5D8V7 595 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 VWA3AA6NCI4 1184 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 RNF40O75150 1001 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 NR1I2O75469 434 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 LONRF2Q1L5Z9 754 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 KRT71Q3SY84 523 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 FAM204AQ9H8W3 233 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 PPANQ9NQ55 473 aaKnown RBP19.57■□□□□ 0.72
SYNE3-204ENST00000555759 TMEM110-MUSTN1A8MSY1 372 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 PKP1Q13835 747 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 CCDC62Q6P9F0 684 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 ARHGEF2Q92974 986 aaKnown RBP19.57■□□□□ 0.72
SYNE3-204ENST00000555759 MRVI1Q9Y6F6 885 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 PLB1Q6P1J6 1458 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 ZNF853P0CG23 659 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 NAPAP54920 295 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 TBC1D31Q96DN5 1066 aa19.57■□□□□ 0.72
SYNE3-204ENST00000555759 DDX41Q9UJV9 622 aaKnown RBP19.57■□□□□ 0.72
SYNE3-204ENST00000555759 TRAF1Q13077 416 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 RAPGEF1Q13905 1077 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 MAP7D1Q3KQU3 841 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 GSPT1P15170 499 aaKnown RBP19.56■□□□□ 0.72
SYNE3-204ENST00000555759 SYCE1Q8N0S2 351 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 TMOD2Q9NZR1 351 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 CCT5P48643 541 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 SV2BQ7L1I2 683 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 HS2ST1Q7LGA3 356 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 CCDC84Q86UT8 332 aaPredicted RBP19.56■□□□□ 0.72
SYNE3-204ENST00000555759 IFNL2Q8IZJ0 200 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 USH1CQ9Y6N9 552 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 MAP7Q14244 749 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 ZNF622Q969S3 477 aaKnown RBP eCLIP19.56■□□□□ 0.72
SYNE3-204ENST00000555759 MYO1AQ9UBC5 1043 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 FAM184BQ9ULE4 1060 aa19.56■□□□□ 0.72
SYNE3-204ENST00000555759 XAGE3Q8WTP9 111 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 PARP2Q9UGN5 583 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.55■□□□□ 0.72
SYNE3-204ENST00000555759 FAM135BQ49AJ0 1406 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 GNA11P29992 359 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 ADKP55263 362 aaKnown RBP19.55■□□□□ 0.72
SYNE3-204ENST00000555759 UBL4BQ8N7F7 174 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 TRIML1Q8N9V2 468 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 ZNF365Q70YC5 407 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 OR8K1Q8NGG5 319 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 RAB17Q9H0T7 212 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 CYP7A1P22680 504 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 ZC3H6P61129 1189 aaKnown RBP19.55■□□□□ 0.72
SYNE3-204ENST00000555759 HYOU1Q9Y4L1 999 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 PLCB3Q01970 1234 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 EIF4A2Q14240 407 aaKnown RBP19.55■□□□□ 0.72
SYNE3-204ENST00000555759 ASIC2Q16515 512 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 ME3Q16798 604 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 BABAM1Q9NWV8 329 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.55■□□□□ 0.72
SYNE3-204ENST00000555759 ITSN2Q9NZM3 1697 aa19.55■□□□□ 0.72
SYNE3-204ENST00000555759 CASQ2O14958 399 aaPredicted RBP19.54■□□□□ 0.72
SYNE3-204ENST00000555759 TCP1P17987 556 aaKnown RBP19.54■□□□□ 0.72
SYNE3-204ENST00000555759 ARID4AP29374 1257 aaPredicted RBP19.54■□□□□ 0.72
SYNE3-204ENST00000555759 RPS6KA1Q15418 735 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 HNRNPH2P55795 449 aaKnown RBP19.54■□□□□ 0.72
SYNE3-204ENST00000555759 TAB2Q9NYJ8 693 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 STX8Q9UNK0 236 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 CFAP43Q8NDM7 1665 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 PDE4DQ08499 809 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 PPP2R5EQ16537 467 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 SLFNL1Q499Z3 407 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 PHLDB3Q6NSJ2 640 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 CEP104O60308 925 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 TSPY3P0CV98 308 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 TSPY8P0CW00 308 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 ZNF131P52739 623 aa19.54■□□□□ 0.72
SYNE3-204ENST00000555759 EEF2P13639 858 aaKnown RBP19.53■□□□□ 0.72
SYNE3-204ENST00000555759 CTNNA1P35221 906 aaKnown RBP19.53■□□□□ 0.72
SYNE3-204ENST00000555759 ICE2Q659A1 982 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 CCDC65Q8IXS2 484 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 BICD1Q96G01 975 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 ANGEL1Q9UNK9 670 aaKnown RBP19.53■□□□□ 0.72
SYNE3-204ENST00000555759 DENND2CQ68D51 928 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 MCTP2Q6DN12 878 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 COPS6Q7L5N1 327 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 CEP120Q8N960 986 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 HOMER3Q9NSC5 361 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 MAGEA9P43362 315 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 GSTO1P78417 241 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 KLHL7Q8IXQ5 586 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 RAB3IL1Q8TBN0 382 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 IFIH1Q9BYX4 1025 aaKnown RBP19.53■□□□□ 0.72
SYNE3-204ENST00000555759 TRAF5O00463 557 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 TFCP2Q12800 502 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 MUM1Q2TAK8 710 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 PHACTR3Q96KR7 559 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 DUOX2Q9NRD8 1548 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms