RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 PLCG2P16885 1265 aa17.23■□□□□ 0.35
SHMT2-217ENST00000555116 ECE1P42892 770 aa17.23■□□□□ 0.35
SHMT2-217ENST00000555116 SH3BP5LQ7L8J4 393 aa17.23■□□□□ 0.35
SHMT2-217ENST00000555116 TEX11Q8IYF3 940 aa17.23■□□□□ 0.35
SHMT2-217ENST00000555116 MYH1P12882 1939 aa17.23■□□□□ 0.35
SHMT2-217ENST00000555116 FAM155AB1AL88 458 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-217ENST00000555116 PDE1AP54750 535 aa17.22■□□□□ 0.35
SHMT2-217ENST00000555116 MIGA1Q8NAN2 632 aa17.22■□□□□ 0.35
SHMT2-217ENST00000555116 ZNF532Q9HCE3 1301 aa17.22■□□□□ 0.35
SHMT2-217ENST00000555116 ADD2P35612 726 aa17.22■□□□□ 0.35
SHMT2-217ENST00000555116 PICALMQ13492 652 aa17.22■□□□□ 0.35
SHMT2-217ENST00000555116 SIPA1L1O43166 1804 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 ZNF157P51786 506 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-217ENST00000555116 GRM1Q13255 1194 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 SLFNL1Q499Z3 407 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 RASAL3Q86YV0 1011 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 KBTBD3Q8NAB2 608 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 HOOK2Q96ED9 719 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 RIOK1Q9BRS2 568 aaKnown RBP17.21■□□□□ 0.35
SHMT2-217ENST00000555116 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.21■□□□□ 0.356e-7■■□□□ 14.2
SHMT2-217ENST00000555116 TSHZ2Q9NRE2 1034 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 COL2A1P02458 1487 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-217ENST00000555116 ATRNL1Q5VV63 1379 aa17.21■□□□□ 0.35
SHMT2-217ENST00000555116 DDTLA6NHG4 134 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-217ENST00000555116 CHGBP05060 677 aa17.2■□□□□ 0.34
SHMT2-217ENST00000555116 SLC10A3P09131 477 aa17.2■□□□□ 0.34
SHMT2-217ENST00000555116 IREB2P48200 963 aaKnown RBP17.2■□□□□ 0.34
SHMT2-217ENST00000555116 CCDC102AQ96A19 550 aa17.2■□□□□ 0.34
SHMT2-217ENST00000555116 AOC2O75106 756 aa17.2■□□□□ 0.34
SHMT2-217ENST00000555116 CERS3Q8IU89 383 aa17.2■□□□□ 0.34
SHMT2-217ENST00000555116 TGFBRAP1Q8WUH2 860 aa17.2■□□□□ 0.34
SHMT2-217ENST00000555116 OSBPL5Q9H0X9 879 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-217ENST00000555116 UNCXA6NJT0 531 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 UBE3CQ15386 1083 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 DCAF15Q66K64 600 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 MIGA2Q7L4E1 593 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 PLEKHM2Q8IWE5 1019 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 CLMNQ96JQ2 1002 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 LAMB1P07942 1786 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 NAV1Q8NEY1 1877 aa17.19■□□□□ 0.34
SHMT2-217ENST00000555116 MAGEB6P1A0A0J9YX57 407 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 MAPKAPK5Q8IW41 473 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 ZSCAN29Q8IWY8 852 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-217ENST00000555116 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.18■□□□□ 0.344e-7■■□□□ 12.9
SHMT2-217ENST00000555116 CSRNP1Q96S65 589 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 ZIC5Q96T25 663 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 FLT1P17948 1338 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 DDX60LQ5H9U9 1706 aaKnown RBP17.18■□□□□ 0.34
SHMT2-217ENST00000555116 MAP2K2P36507 400 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 NOGQ13253 232 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 ZSCAN25Q6NSZ9 544 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-217ENST00000555116 ANKRD13AQ8IZ07 590 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 ZNF341Q9BYN7 854 aa17.18■□□□□ 0.34
SHMT2-217ENST00000555116 MAP3K9P80192 1104 aa17.17■□□□□ 0.34
SHMT2-217ENST00000555116 MAP3K10Q02779 954 aa17.17■□□□□ 0.34
SHMT2-217ENST00000555116 LCORLQ8N3X6 602 aa17.17■□□□□ 0.34
SHMT2-217ENST00000555116 OSBPL3Q9H4L5 887 aa17.17■□□□□ 0.34
SHMT2-217ENST00000555116 ZNF112Q9UJU3 913 aa17.17■□□□□ 0.34
SHMT2-217ENST00000555116 BAZ2AQ9UIF9 1905 aaKnown RBP17.17■□□□□ 0.34
SHMT2-217ENST00000555116 PDE4AP27815 886 aa17.16■□□□□ 0.34
SHMT2-217ENST00000555116 SLC10A4Q96EP9 437 aa17.16■□□□□ 0.34
SHMT2-217ENST00000555116 RNF113AO15541 343 aaKnown RBP17.16■□□□□ 0.34
SHMT2-217ENST00000555116 SLURP2P0DP57 97 aa17.16■□□□□ 0.34
SHMT2-217ENST00000555116 WRNIP1Q96S55 665 aa17.16■□□□□ 0.34
SHMT2-217ENST00000555116 MBD4O95243 580 aa17.15■□□□□ 0.34
SHMT2-217ENST00000555116 KIF23Q02241 960 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-217ENST00000555116 VGLL4Q14135 290 aa17.15■□□□□ 0.34
SHMT2-217ENST00000555116 CRNKL1Q9BZJ0 848 aaKnown RBP17.15■□□□□ 0.34
SHMT2-217ENST00000555116 PUS7LQ9H0K6 701 aaKnown RBP17.15■□□□□ 0.34
SHMT2-217ENST00000555116 DHX36Q9H2U1 1008 aaKnown RBP17.15■□□□□ 0.34
SHMT2-217ENST00000555116 ARMT1Q9H993 441 aa17.15■□□□□ 0.34
SHMT2-217ENST00000555116 PHF20L1A8MW92 1017 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 TBC1D12O60347 775 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 ZFYP08048 801 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-217ENST00000555116 USP5P45974 858 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 SPRYD7Q5W111 196 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 WNK4Q96J92 1243 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 SAP30BPQ9UHR5 308 aaKnown RBP17.14■□□□□ 0.33
SHMT2-217ENST00000555116 DOCK1Q14185 1865 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 ATAD5Q96QE3 1844 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 INPP5BP32019 993 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 APPBP2Q92624 585 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 ZKSCAN4Q969J2 545 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-217ENST00000555116 EVI5LQ96CN4 794 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 FSD1Q9BTV5 496 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 ELP3Q9H9T3 547 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 WBP1LQ9NX94 342 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-217ENST00000555116 PALD1Q9ULE6 856 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 CSADQ9Y600 493 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 SNCAIPQ9Y6H5 919 aa17.14■□□□□ 0.33
SHMT2-217ENST00000555116 GJA5P36382 358 aa17.13■□□□□ 0.33
SHMT2-217ENST00000555116 OSBP2Q969R2 916 aa17.13■□□□□ 0.33
SHMT2-217ENST00000555116 PI4KBQ9UBF8 816 aa17.13■□□□□ 0.33
SHMT2-217ENST00000555116 PCNTO95613 3336 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 FAM196BA6NMK8 535 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 PRKAB2O43741 272 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 MAP2K1Q02750 393 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 MKRN3Q13064 507 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms