RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 EPHA4P54764 986 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 ZNF468Q5VIY5 522 aaPredicted RBP6.35□□□□□ -1.39
VTI1B-202ENST00000553619 SSH1Q8WYL5 1049 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 FRAT1Q92837 279 aaPredicted RBP6.35□□□□□ -1.39
VTI1B-202ENST00000553619 API5Q9BZZ5 524 aaKnown RBP6.35□□□□□ -1.39
VTI1B-202ENST00000553619 GTF3C3Q9Y5Q9 886 aa6.35□□□□□ -1.39
VTI1B-202ENST00000553619 TNS2Q63HR2 1409 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 PTPRCP08575 1304 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 ADAMTS7Q9UKP4 1686 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 PIK3R2O00459 728 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 EIF2S2P20042 333 aaKnown RBP6.34□□□□□ -1.39
VTI1B-202ENST00000553619 CHRNA4P43681 627 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 XP32Q5T750 250 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 SH3PXD2AQ5TCZ1 1133 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 HDGFL1Q5TGJ6 251 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 FAM196AQ6ZSG2 479 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 CD163Q86VB7 1156 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 SLC9A9Q8IVB4 645 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 FTSJ3Q8IY81 847 aaKnown RBP6.34□□□□□ -1.39
VTI1B-202ENST00000553619 TSPYL6Q8N831 410 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 MARCH10Q8NA82 808 aaPredicted RBP6.34□□□□□ -1.39
VTI1B-202ENST00000553619 SYTL4Q96C24 671 aaPredicted RBP6.34□□□□□ -1.39
VTI1B-202ENST00000553619 NEUROD4Q9HD90 331 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 HYPKQ9NX55 129 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 MARK1Q9P0L2 795 aa6.34□□□□□ -1.39
VTI1B-202ENST00000553619 DBF4Q9UBU7 674 aaPredicted RBP6.34□□□□□ -1.39
VTI1B-202ENST00000553619 NOB1Q9ULX3 412 aaKnown RBP6.34□□□□□ -1.39
VTI1B-202ENST00000553619 WNK3Q9BYP7 1800 aa6.34□□□□□ -1.4
VTI1B-202ENST00000553619 KDM6AO15550 1401 aaPredicted RBP6.33□□□□□ -1.4
VTI1B-202ENST00000553619 POM121CA8CG34 1229 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 STARD3NLO95772 234 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 DDX58O95786 925 aaKnown RBP6.33□□□□□ -1.4
VTI1B-202ENST00000553619 SLC39A6Q13433 755 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 TEAD4Q15561 434 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 ATF7IPQ6VMQ6 1270 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 LRRC69Q6ZNQ3 347 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 ILDR2Q71H61 639 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 KRT27Q7Z3Y8 459 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 NPM2Q86SE8 214 aaKnown RBP6.33□□□□□ -1.4
VTI1B-202ENST00000553619 DZIP1LQ8IYY4 767 aaKnown RBP6.33□□□□□ -1.4
VTI1B-202ENST00000553619 TNS4Q8IZW8 715 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 ADAMTS19Q8TE59 1207 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 PIGBQ92521 554 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 TRIM11Q96F44 468 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 NOP53Q9NZM5 478 aaKnown RBP6.33□□□□□ -1.4
VTI1B-202ENST00000553619 PRR12Q9ULL5 1215 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 ZNF232Q9UNY5 417 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 KIAA1024Q9UPX6 916 aa6.33□□□□□ -1.4
VTI1B-202ENST00000553619 LRRC37A3O60309 1634 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 HEG1Q9ULI3 1381 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 SIPA1L3O60292 1781 aaPredicted RBP6.32□□□□□ -1.4
VTI1B-202ENST00000553619 KDM3BQ7LBC6 1761 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 USP17L3A6NCW0 530 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 USP17L4A6NCW7 530 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 EML1O00423 815 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 KCNQ3O43525 872 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 PLIN1O60240 522 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 NOS2P35228 1153 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 LAMC2Q13753 1193 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 USP17L2Q6R6M4 530 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 USP17L1Q7RTZ2 530 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 ACSBG1Q96GR2 724 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 ZNF496Q96IT1 587 aaPredicted RBP6.32□□□□□ -1.4
VTI1B-202ENST00000553619 BCL2L13Q9BXK5 485 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 DDX21Q9NR30 783 aaKnown RBP eCLIP6.32□□□□□ -1.4
VTI1B-202ENST00000553619 PPP4R2Q9NY27 417 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 DDX19BQ9UMR2 479 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 HDAC5Q9UQL6 1122 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 MRC1P22897 1456 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 ITGB4P16144 1822 aa6.32□□□□□ -1.4
VTI1B-202ENST00000553619 ATP9BO43861 1147 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 PTCD1O75127 700 aaKnown RBP6.31□□□□□ -1.4
VTI1B-202ENST00000553619 KRT24Q2M2I5 525 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 SYT9Q86SS6 491 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 PLEKHM2Q8IWE5 1019 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 TPCN2Q8NHX9 752 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 C7orf43Q8WVR3 580 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 MDFIQ99750 246 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 ATG3Q9NT62 314 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 USP16Q9Y5T5 823 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 BCL9O00512 1426 aa6.31□□□□□ -1.4
VTI1B-202ENST00000553619 SHANK3Q9BYB0 1731 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 ELOA3CA0A087WX78 387 aaPredicted RBP6.3□□□□□ -1.4
VTI1B-202ENST00000553619 ELOA3DA6NLF2 546 aaPredicted RBP6.3□□□□□ -1.4
VTI1B-202ENST00000553619 TCERG1O14776 1098 aaKnown RBP6.3□□□□□ -1.4
VTI1B-202ENST00000553619 CCT4P50991 539 aaKnown RBP6.3□□□□□ -1.4
VTI1B-202ENST00000553619 CLDN10P78369 228 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 SFSWAPQ12872 951 aaKnown RBP6.3□□□□□ -1.4
VTI1B-202ENST00000553619 FKBP5Q13451 457 aaPredicted RBP6.3□□□□□ -1.4
VTI1B-202ENST00000553619 ELOA3BQ3SY89 546 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 ELOA3Q8NG57 546 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 UCN2Q96RP3 112 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 SLC30A3Q99726 388 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 PLVAPQ9BX97 442 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 ASAP1Q9ULH1 1129 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 GLI3P10071 1580 aa6.3□□□□□ -1.4
VTI1B-202ENST00000553619 SERTM1A2A2V5 107 aa6.29□□□□□ -1.4
VTI1B-202ENST00000553619 PALM3A6NDB9 673 aaPredicted RBP6.29□□□□□ -1.4
VTI1B-202ENST00000553619 ZBTB7BO15156 539 aaPredicted RBP6.29□□□□□ -1.4
VTI1B-202ENST00000553619 TRIM27P14373 513 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms