RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 ZFPM1Q8IX07 1006 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 TEX11Q8IYF3 940 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 OPTNQ96CV9 577 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 ELP3Q9H9T3 547 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 AATFQ9NY61 560 aaKnown RBP eCLIP18.65■□□□□ 0.58
SHMT2-204ENST00000553324 ZNF112Q9UJU3 913 aa18.65■□□□□ 0.58
SHMT2-204ENST00000553324 CYP7A1P22680 504 aa18.64■□□□□ 0.57
SHMT2-204ENST00000553324 MAP3K10Q02779 954 aa18.64■□□□□ 0.57
SHMT2-204ENST00000553324 ERO1BQ86YB8 467 aa18.64■□□□□ 0.57
SHMT2-204ENST00000553324 GPATCH3Q96I76 525 aa18.64■□□□□ 0.57
SHMT2-204ENST00000553324 TBC1D12O60347 775 aa18.63■□□□□ 0.57
SHMT2-204ENST00000553324 TNS4Q8IZW8 715 aa18.63■□□□□ 0.57
SHMT2-204ENST00000553324 MAGEB6Q8N7X4 407 aa18.63■□□□□ 0.57
SHMT2-204ENST00000553324 DHX36Q9H2U1 1008 aaKnown RBP18.63■□□□□ 0.57
SHMT2-204ENST00000553324 ANTXR1Q9H6X2 564 aa18.63■□□□□ 0.57
SHMT2-204ENST00000553324 DDX4Q9NQI0 724 aaKnown RBP18.63■□□□□ 0.57
SHMT2-204ENST00000553324 ZBTB47Q9UFB7 747 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-204ENST00000553324 TSKSQ9UJT2 592 aa18.63■□□□□ 0.57
SHMT2-204ENST00000553324 MYH2Q9UKX2 1941 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 SPDYE5A6NIY4 337 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 GTF2A2P52657 109 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 PPATQ06203 517 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 SH3RF3Q8TEJ3 882 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-204ENST00000553324 ZKSCAN4Q969J2 545 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-204ENST00000553324 DNAJC2Q99543 621 aaKnown RBP18.62■□□□□ 0.57
SHMT2-204ENST00000553324 HAUS7Q99871 368 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 OSBPL5Q9H0X9 879 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-204ENST00000553324 BOLA2Q9H3K6 86 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 ECHDC1Q9NTX5 307 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 NDUFB9Q9Y6M9 179 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 RFX7Q2KHR2 1363 aa18.62■□□□□ 0.57
SHMT2-204ENST00000553324 ATRNL1Q5VV63 1379 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 TESPA1A2RU30 521 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-204ENST00000553324 DDTLA6NHG4 134 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-204ENST00000553324 GOLIM4O00461 696 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 SMARCA5O60264 1052 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-204ENST00000553324 HDAC1Q13547 482 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-204ENST00000553324 SLC9C2Q5TAH2 1124 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 SH3BP5LQ7L8J4 393 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 IFNL1Q8IU54 200 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 CFHR5Q9BXR6 569 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 PAG1Q9NWQ8 432 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 PI4KBQ9UBF8 816 aa18.61■□□□□ 0.57
SHMT2-204ENST00000553324 GJA5P36382 358 aa18.6■□□□□ 0.57
SHMT2-204ENST00000553324 NOL9Q5SY16 702 aaKnown RBP18.6■□□□□ 0.57
SHMT2-204ENST00000553324 ADGRA1Q86SQ6 560 aa18.6■□□□□ 0.57
SHMT2-204ENST00000553324 TGFBRAP1Q8WUH2 860 aa18.6■□□□□ 0.57
SHMT2-204ENST00000553324 GCC1Q96CN9 775 aa18.6■□□□□ 0.57
SHMT2-204ENST00000553324 OTUD5Q96G74 571 aa18.6■□□□□ 0.57
SHMT2-204ENST00000553324 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.6■□□□□ 0.571e-6■■□□□ 11.9
SHMT2-204ENST00000553324 SNCAIPQ9Y6H5 919 aa18.6■□□□□ 0.57
SHMT2-204ENST00000553324 AKAP11Q9UKA4 1901 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 PHF20L1A8MW92 1017 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 CTNND1O60716 968 aaKnown RBP18.59■□□□□ 0.57
SHMT2-204ENST00000553324 INPP5BP32019 993 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 PPIL2Q13356 520 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 SNAPC2Q13487 334 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 NOM1Q5C9Z4 860 aaKnown RBP18.59■□□□□ 0.57
SHMT2-204ENST00000553324 MS4A4AQ96JQ5 239 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.59■□□□□ 0.57
SHMT2-204ENST00000553324 PICK1Q9NRD5 415 aa18.59■□□□□ 0.57
SHMT2-204ENST00000553324 HERC5Q9UII4 1024 aaKnown RBP18.59■□□□□ 0.57
SHMT2-204ENST00000553324 SUPT16HQ9Y5B9 1047 aaKnown RBP18.59■□□□□ 0.57
SHMT2-204ENST00000553324 COL2A1P02458 1487 aaPredicted RBP18.58■□□□□ 0.57
SHMT2-204ENST00000553324 CETPP11597 493 aa18.58■□□□□ 0.56
SHMT2-204ENST00000553324 ZSCAN25Q6NSZ9 544 aa18.58■□□□□ 0.56
SHMT2-204ENST00000553324 FOXP4Q8IVH2 680 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-204ENST00000553324 RWDD1Q9H446 243 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-204ENST00000553324 MAGEB6P1A0A0J9YX57 407 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 TBC1D8O95759 1140 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 PDE6AP16499 860 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 USP5P45974 858 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 DYNLL1P63167 89 aaKnown RBP18.57■□□□□ 0.56
SHMT2-204ENST00000553324 IFFO2Q5TF58 517 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 MAPKAPK5Q8IW41 473 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 SCYL3Q8IZE3 742 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 MIGA1Q8NAN2 632 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 CNKSR2Q8WXI2 1034 aa18.57■□□□□ 0.56
SHMT2-204ENST00000553324 FLT1P17948 1338 aa18.56■□□□□ 0.56
SHMT2-204ENST00000553324 CCL15-CCL14A0A0B4J2E2 113 aa18.56■□□□□ 0.56
SHMT2-204ENST00000553324 IRF6O14896 467 aa18.56■□□□□ 0.56
SHMT2-204ENST00000553324 ERC2O15083 957 aa18.56■□□□□ 0.56
SHMT2-204ENST00000553324 HLA-DOAP06340 250 aa18.56■□□□□ 0.56
SHMT2-204ENST00000553324 CCL15Q16663 113 aa18.56■□□□□ 0.56
SHMT2-204ENST00000553324 TTC41PQ6P2S7 1318 aa18.55■□□□□ 0.56
SHMT2-204ENST00000553324 ZNF532Q9HCE3 1301 aa18.55■□□□□ 0.56
SHMT2-204ENST00000553324 IGF2BP3O00425 579 aaKnown RBP eCLIP18.55■□□□□ 0.56
SHMT2-204ENST00000553324 CXCL11O14625 94 aa18.55■□□□□ 0.56
SHMT2-204ENST00000553324 ANKRD45Q5TZF3 282 aa18.55■□□□□ 0.56
SHMT2-204ENST00000553324 PTPN18Q99952 460 aa18.55■□□□□ 0.56
SHMT2-204ENST00000553324 RIOK1Q9BRS2 568 aaKnown RBP18.55■□□□□ 0.56
SHMT2-204ENST00000553324 TRIM34Q9BYJ4 488 aa18.55■□□□□ 0.56
SHMT2-204ENST00000553324 CRNKL1Q9BZJ0 848 aaKnown RBP18.55■□□□□ 0.56
SHMT2-204ENST00000553324 ZCCHC17Q9NP64 241 aaKnown RBP18.55■□□□□ 0.56
SHMT2-204ENST00000553324 TCRBV5S4A2TA0A5A2 114 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 GPR25O00155 361 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 ADD2P35612 726 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 UBE3CQ15386 1083 aa18.54■□□□□ 0.56
SHMT2-204ENST00000553324 LRRFIP1Q32MZ4 808 aaKnown RBP18.54■□□□□ 0.56
SHMT2-204ENST00000553324 TTC6Q86TZ1 520 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms