RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 HSP90AA2PQ14568 343 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 NFIXQ14938 502 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 SART3Q15020 963 aaKnown RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 SAFBQ15424 915 aaKnown RBP eCLIP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF174Q15697 407 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 ANO1Q5XXA6 986 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 RASGRP2Q7LDG7 609 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 HOMER1Q86YM7 354 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 MAPKAPK5Q8IW41 473 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 DIS3L2Q8IYB7 885 aaKnown RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 TMEM87AQ8NBN3 555 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 RASSF8Q8NHQ8 419 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 RASGRP4Q8TDF6 673 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 PDLIM2Q96JY6 352 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 FAM84BQ96KN1 310 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 AK7Q96M32 723 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 STX8Q9UNK0 236 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 MROH5Q6ZUA9 1318 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 ERVV-1B6SEH8 477 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 SH2B2O14492 632 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PLEKHA8P1O95397 391 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 GOLGA8HP0CJ92 632 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PICALMQ13492 652 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 UBE3CQ15386 1083 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 GRIK5Q16478 980 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 DPCR1Q3MIW9 517 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 USP49Q70CQ1 688 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 GPIHBP1Q8IV16 184 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 EEF2KMTQ96G04 330 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TSPY2A6NKD2 308 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TRIM37O94972 964 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF202O95125 648 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 HIBADHP31937 336 aaKnown RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 SYKP43405 635 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 KIF23Q02241 960 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PARP10Q53GL7 1025 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TPTE2Q6XPS3 522 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TRMT44Q8IYL2 757 aaKnown RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TRIM22Q8IYM9 498 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PLA2G12BQ9BX93 195 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 RCOR1Q9UKL0 485 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TNKSO95271 1327 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 DCCP43146 1447 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 RIC1Q4ADV7 1423 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 AFDNP55196 1824 aaKnown RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PES1O00541 588 aaKnown RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 PFKFB1P16118 471 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TPD52L1Q16890 204 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 CCDC144BQ3MJ40 725 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 IFIT1BQ5T764 474 aaKnown RBP6.47□□□□□ -1.37
LIMA1-215ENST00000552823 LINC00301Q8NCQ3 95 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 TGFBRAP1Q8WUH2 860 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 LY9Q9HBG7 655 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 CDHR2Q9BYE9 1310 aa6.47□□□□□ -1.37
LIMA1-215ENST00000552823 G3V3G9 751 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 OFD1O75665 1012 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 CDK11BP21127 795 aaKnown RBP6.46□□□□□ -1.37
LIMA1-215ENST00000552823 FGFR2P21802 821 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 FAM160A1Q05DH4 1040 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 TRAPPC3LQ5T215 181 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 DCAF8Q5TAQ9 597 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 TMC6Q7Z403 805 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF654Q8IZM8 581 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 CNNM3Q8NE01 707 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 IGDCC4Q8TDY8 1250 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 CPLX3Q8WVH0 158 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 GPKOWQ92917 476 aaPredicted RBP eCLIP6.46□□□□□ -1.37
LIMA1-215ENST00000552823 SMARCC1Q92922 1105 aaPredicted RBP6.46□□□□□ -1.37
LIMA1-215ENST00000552823 LLPHQ9BRT6 129 aaKnown RBP6.46□□□□□ -1.37
LIMA1-215ENST00000552823 FUCA2Q9BTY2 467 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 MXD3Q9BW11 206 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 KCNF1Q9H3M0 494 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 MKNK2Q9HBH9 465 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 IFNKQ9P0W0 207 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 MAPK8IP1Q9UQF2 711 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 PCDHB6Q9Y5E3 794 aa6.46□□□□□ -1.37
LIMA1-215ENST00000552823 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.46□□□□□ -1.38
LIMA1-215ENST00000552823 TCRBV5S4A2TA0A5A2 114 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 USP17L3A6NCW0 530 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 USP17L4A6NCW7 530 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 GOLGA6L6A8MZA4 724 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 ATP1A3P13637 1013 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 MECOMQ03112 1051 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 NAA30Q147X3 362 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-215ENST00000552823 USP17L1Q7RTZ2 530 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 DHX58Q96C10 678 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 BCL2L12Q9HB09 334 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 SPATA31A5Q5VU36 1347 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 SPATA31A7Q8IWB4 1347 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 SCN11AQ9UI33 1791 aa6.46□□□□□ -1.38
LIMA1-215ENST00000552823 POLR2DO15514 142 aaKnown RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 ZNF75DP51815 510 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 CLEC10AQ8IUN9 316 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 SMYD4Q8IYR2 804 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 CEP57L1Q8IYX8 460 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 CACTINQ8WUQ7 758 aaKnown RBP6.45□□□□□ -1.38
LIMA1-215ENST00000552823 IL17RAQ96F46 866 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 ABCC12Q96J65 1359 aa6.45□□□□□ -1.38
LIMA1-215ENST00000552823 KCPQ6ZWJ8 1503 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms