RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 BACH2Q9BYV9 841 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 GPR108Q9NPR9 543 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 EVA1BQ9NVM1 165 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 CARMIL3Q8ND23 1372 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 PDE8AO60658 829 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 SLC10A5Q5PT55 438 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 ANKRD45Q5TZF3 282 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 SKAP1Q86WV1 359 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 LNPKQ9C0E8 428 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 NOVA2Q9UNW9 492 aaKnown RBP10.35□□□□□ -0.75
VPS29-203ENST00000546588 EXOC6BQ9Y2D4 811 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 ABCC12Q96J65 1359 aa10.35□□□□□ -0.75
VPS29-203ENST00000546588 TTC41PQ6P2S7 1318 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 SASH1O94885 1247 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 CTSWP56202 376 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 SLFNL1Q499Z3 407 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 SUSD4Q5VX71 490 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 LMBR1LQ6UX01 489 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 MPNDQ8N594 471 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 TTLL11Q8NHH1 800 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 SLC16A10Q8TF71 515 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 STK32AQ8WU08 396 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 CAMKK2Q96RR4 588 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 UTP14AQ9BVJ6 771 aaKnown RBP10.34□□□□□ -0.75
VPS29-203ENST00000546588 PCDHB9Q9Y5E1 797 aa10.34□□□□□ -0.75
VPS29-203ENST00000546588 BRCA1P38398 1863 aaKnown RBP10.34□□□□□ -0.75
VPS29-203ENST00000546588 ZC3H4Q9UPT8 1303 aaKnown RBP10.33□□□□□ -0.76
VPS29-203ENST00000546588 SURF6O75683 361 aaKnown RBP10.33□□□□□ -0.76
VPS29-203ENST00000546588 SF3B3Q15393 1217 aaKnown RBP10.33□□□□□ -0.76
VPS29-203ENST00000546588 TRAPPC3LQ5T215 181 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 TTC22Q5TAA0 569 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 TMEM164Q5U3C3 297 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 ATG9AQ7Z3C6 839 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 TICAM2Q86XR7 235 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 FLAD1Q8NFF5 587 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 FAM174AQ8TBP5 190 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 FAM89AQ96GI7 184 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 NYXQ9GZU5 481 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 UNC93B1Q9H1C4 597 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 NIP7Q9Y221 180 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS29-203ENST00000546588 WASF2Q9Y6W5 498 aa10.33□□□□□ -0.76
VPS29-203ENST00000546588 RFX7Q2KHR2 1363 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 H3BM21 787 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 IRS4O14654 1257 aaPredicted RBP10.32□□□□□ -0.76
VPS29-203ENST00000546588 GYS1P13807 737 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 GSPT1P15170 499 aaKnown RBP10.32□□□□□ -0.76
VPS29-203ENST00000546588 MX1P20591 662 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 GMPRP36959 345 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 RGS3P49796 1198 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 PDE1AP54750 535 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 KCNQ4P56696 695 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 PTK2Q05397 1052 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 USPL1Q5W0Q7 1092 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 CCDC125Q86Z20 511 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 TRMT112Q9UI30 125 aaKnown RBP10.32□□□□□ -0.76
VPS29-203ENST00000546588 ZMIZ1Q9ULJ6 1067 aa10.32□□□□□ -0.76
VPS29-203ENST00000546588 MAST2Q6P0Q8 1798 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 ZNF646O15015 1829 aaPredicted RBP10.31□□□□□ -0.76
VPS29-203ENST00000546588 APBA3O96018 575 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 GPTP24298 496 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 TM4SF1P30408 202 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 IL15P40933 162 aaPredicted RBP10.31□□□□□ -0.76
VPS29-203ENST00000546588 ZNF827Q17R98 1081 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 TBC1D9BQ66K14 1250 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 RNF135Q8IUD6 432 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 VGLL2Q8N8G2 317 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 PI4K2BQ8TCG2 481 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 MKRN1Q9UHC7 482 aaKnown RBP10.31□□□□□ -0.76
VPS29-203ENST00000546588 CACNA1SQ13698 1873 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 MYO5AQ9Y4I1 1855 aaKnown RBP10.31□□□□□ -0.76
VPS29-203ENST00000546588 DUOX1Q9NRD9 1551 aa10.31□□□□□ -0.76
VPS29-203ENST00000546588 KLRG2A4D1S0 409 aaPredicted RBP10.3□□□□□ -0.76
VPS29-203ENST00000546588 EYA2O00167 538 aa10.3□□□□□ -0.76
VPS29-203ENST00000546588 KCNH2Q12809 1159 aa10.3□□□□□ -0.76
VPS29-203ENST00000546588 NCOA4Q13772 614 aa10.3□□□□□ -0.76
VPS29-203ENST00000546588 ELOAQ14241 798 aaKnown RBP10.3□□□□□ -0.76
VPS29-203ENST00000546588 SND1Q7KZF4 910 aaKnown RBP eCLIP10.3□□□□□ -0.764e-6■■■□□ 14.7
VPS29-203ENST00000546588 CLASRPQ8N2M8 674 aaKnown RBP10.3□□□□□ -0.76
VPS29-203ENST00000546588 ARMC2Q8NEN0 867 aa10.3□□□□□ -0.76
VPS29-203ENST00000546588 IRF7Q92985 503 aa10.3□□□□□ -0.76
VPS29-203ENST00000546588 PA2G4Q9UQ80 394 aaKnown RBP10.3□□□□□ -0.76
VPS29-203ENST00000546588 PNPLA7Q6ZV29 1317 aa10.3□□□□□ -0.76
VPS29-203ENST00000546588 PSME4Q14997 1843 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L15C9J2P7 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L10C9JJH3 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L13C9JLJ4 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L12C9JPN9 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L11C9JVI0 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L21D6R901 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L18D6R9N7 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L22D6RA61 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L17D6RBQ6 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L19D6RCP7 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L20D6RJB6 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 SMARCA5O60264 1052 aaPredicted RBP10.29□□□□□ -0.76
VPS29-203ENST00000546588 RASA1P20936 1047 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 RFC4P35249 363 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 USP17L24Q0WX57 530 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 G3BP1Q13283 466 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS29-203ENST00000546588 IFIT5Q13325 482 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms