RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 MAP3K12Q12852 859 aa19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 NFIAQ12857 509 aa19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 EPHA10Q5JZY3 1008 aa19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 C9orf50Q5SZB4 431 aa19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 ZFPM1Q8IX07 1006 aa19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 SLC45A1Q9Y2W3 748 aa19.62■□□□□ 0.73
CLSTN3-216ENST00000545663 PHF20L1A8MW92 1017 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 SLURP2P0DP57 97 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 PRKAR2AP13861 404 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 UBE4AQ14139 1066 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 TREML2Q5T2D2 321 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 LMBR1LQ6UX01 489 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 FBXO33Q7Z6M2 555 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 IFT57Q9NWB7 429 aa19.61■□□□□ 0.73
CLSTN3-216ENST00000545663 MAP3K21Q5TCX8 1036 aa19.6■□□□□ 0.73
CLSTN3-216ENST00000545663 CCDC84Q86UT8 332 aaPredicted RBP19.6■□□□□ 0.73
CLSTN3-216ENST00000545663 MRIQ9BWK5 157 aa19.6■□□□□ 0.73
CLSTN3-216ENST00000545663 PUS3Q9BZE2 481 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-216ENST00000545663 TRIM75PA6NK02 468 aa19.59■□□□□ 0.73
CLSTN3-216ENST00000545663 GNAI1P63096 354 aa19.59■□□□□ 0.73
CLSTN3-216ENST00000545663 FAM110CQ1W6H9 321 aa19.59■□□□□ 0.73
CLSTN3-216ENST00000545663 TAF7LQ5H9L4 462 aa19.59■□□□□ 0.73
CLSTN3-216ENST00000545663 LHX8Q68G74 356 aa19.59■□□□□ 0.73
CLSTN3-216ENST00000545663 SCYL3Q8IZE3 742 aa19.59■□□□□ 0.73
CLSTN3-216ENST00000545663 FRAT2O75474 233 aaPredicted RBP19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 CYP2B6P20813 491 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 CCDC57Q2TAC2 916 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 CDC42EP5Q6NZY7 148 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 HHIPL2Q6UWX4 724 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 VPS37DQ86XT2 251 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 TBC1D22AQ8WUA7 517 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 MYH16Q9H6N6 1097 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 PICK1Q9NRD5 415 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 FAM198AQ9UFP1 575 aa19.58■□□□□ 0.72
CLSTN3-216ENST00000545663 CCND3P30281 292 aaPredicted RBP19.57■□□□□ 0.72
CLSTN3-216ENST00000545663 SENP6Q9GZR1 1112 aaPredicted RBP19.57■□□□□ 0.72
CLSTN3-216ENST00000545663 AGTPBP1Q9UPW5 1226 aa19.57■□□□□ 0.72
CLSTN3-216ENST00000545663 SLC4A2P04920 1241 aa19.56■□□□□ 0.72
CLSTN3-216ENST00000545663 ATN1P54259 1190 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-216ENST00000545663 CACNB2Q08289 660 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-216ENST00000545663 LINS1Q8NG48 757 aa19.56■□□□□ 0.72
CLSTN3-216ENST00000545663 PEX10O60683 326 aa19.55■□□□□ 0.72
CLSTN3-216ENST00000545663 STK31Q9BXU1 1019 aa19.55■□□□□ 0.72
CLSTN3-216ENST00000545663 ADAMTS8Q9UP79 889 aa19.55■□□□□ 0.72
CLSTN3-216ENST00000545663 ATRNL1Q5VV63 1379 aa19.55■□□□□ 0.72
CLSTN3-216ENST00000545663 AK9Q5TCS8 1911 aa19.55■□□□□ 0.72
CLSTN3-216ENST00000545663 PLXNB2O15031 1838 aa19.54■□□□□ 0.72
CLSTN3-216ENST00000545663 SMAD3P84022 425 aaKnown RBP19.54■□□□□ 0.72
CLSTN3-216ENST00000545663 DIXDC1Q155Q3 683 aa19.54■□□□□ 0.72
CLSTN3-216ENST00000545663 DNAAF4Q8WXU2 420 aa19.54■□□□□ 0.72
CLSTN3-216ENST00000545663 GRIN2CQ14957 1233 aa19.53■□□□□ 0.72
CLSTN3-216ENST00000545663 DAGLAQ9Y4D2 1042 aa19.53■□□□□ 0.72
CLSTN3-216ENST00000545663 CCL14Q16627 93 aa19.52■□□□□ 0.72
CLSTN3-216ENST00000545663 CHMP4AQ9BY43 222 aa19.52■□□□□ 0.72
CLSTN3-216ENST00000545663 USP40Q9NVE5 1235 aa19.52■□□□□ 0.72
CLSTN3-216ENST00000545663 NCOR1O75376 2440 aa19.52■□□□□ 0.71
CLSTN3-216ENST00000545663 MAST3O60307 1309 aa19.51■□□□□ 0.71
CLSTN3-216ENST00000545663 PTPRFP10586 1907 aa19.51■□□□□ 0.71
CLSTN3-216ENST00000545663 FLIIQ13045 1269 aa19.51■□□□□ 0.71
CLSTN3-216ENST00000545663 SH3BP5LQ7L8J4 393 aa19.51■□□□□ 0.71
CLSTN3-216ENST00000545663 ADAMTS19Q8TE59 1207 aa19.51■□□□□ 0.71
CLSTN3-216ENST00000545663 TSR2Q969E8 191 aaKnown RBP19.51■□□□□ 0.71
CLSTN3-216ENST00000545663 ZEB1P37275 1124 aaPredicted RBP19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 GCLCP48506 637 aaPredicted RBP19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 FKBP5Q13451 457 aaPredicted RBP19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 CAVIN4Q5BKX8 364 aa19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 PPM1EQ8WY54 764 aa19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 BADQ92934 168 aa19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 PRKAG2Q9UGJ0 569 aa19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 PNMA3Q9UL41 463 aa19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 SUGT1Q9Y2Z0 365 aa19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 LRRFIP2Q9Y608 721 aaKnown RBP19.5■□□□□ 0.71
CLSTN3-216ENST00000545663 XIRP2A4UGR9 3374 aa19.49■□□□□ 0.71
CLSTN3-216ENST00000545663 RTP1P59025 263 aa19.49■□□□□ 0.71
CLSTN3-216ENST00000545663 ASCC2Q9H1I8 757 aaPredicted RBP19.49■□□□□ 0.71
CLSTN3-216ENST00000545663 PHIPQ8WWQ0 1821 aa19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 APAF1O14727 1248 aa19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 XRCC5P13010 732 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 ZKSCAN1P17029 563 aaPredicted RBP19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 WDR43Q15061 677 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 ASB2Q96Q27 587 aa19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 ATP11BQ9Y2G3 1177 aa19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 LTBP2Q14767 1821 aa19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 CHD9Q3L8U1 2897 aa19.48■□□□□ 0.71
CLSTN3-216ENST00000545663 MAST2Q6P0Q8 1798 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 F6X3S4 739 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 CTNND1O60716 968 aaKnown RBP19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 RGS3P49796 1198 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 SPP2Q13103 211 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 LRRC24Q50LG9 513 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 UHRF1Q96T88 793 aaPredicted RBP19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 NUDT12Q9BQG2 462 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 PRDM5Q9NQX1 630 aaPredicted RBP19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 REV3LO60673 3130 aa19.47■□□□□ 0.71
CLSTN3-216ENST00000545663 DDTLA6NHG4 134 aaPredicted RBP19.46■□□□□ 0.71
CLSTN3-216ENST00000545663 HMGCS2P54868 508 aa19.46■□□□□ 0.71
CLSTN3-216ENST00000545663 MAP3K10Q02779 954 aa19.46■□□□□ 0.71
CLSTN3-216ENST00000545663 CALD1Q05682 793 aaKnown RBP19.46■□□□□ 0.71
CLSTN3-216ENST00000545663 BEND3Q5T5X7 828 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms